PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G26945.1 | ||||||||
Common Name | BHLH163, KDR, PRE6, T2P11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 94aa MW: 10717.9 Da PI: 9.2503 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.8 | 1.9e-08 | 20 | 60 | 14 | 54 |
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 d+i + ++L+ l+P++ + +s K+s + +L+++++YI++L AT1G26945.1 20 DQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60 6899999*********889********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.442 | 6 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.7E-9 | 20 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-9 | 20 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-6 | 20 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0040008 | Biological Process | regulation of growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MSSRRSSRSR QSGSSRISDD QISDLVSKLQ HLIPELRRRR SDKVSASKVL QETCNYIRNL 60 HREVDDLSDR LSELLASTDD NSAEAAIIRS LLNY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.44742 | 9e-71 | bud| floral meristem| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT1G26945 | |||||
AtGenExpress | AT1G26945 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a basic helix-loop-helix (bHLH) protein involved in blue/far-red light signaling. Physically interacts with HFR1 and negatively regulates its activity. | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that regulates light-mediated responses in day light conditions by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. Forms non-functional heterodimers with HFR1, causing liberation and activation of PIF4 from the transcriptionally inactive HFR1-PIF4 complex. {ECO:0000269|PubMed:16786307, ECO:0000269|PubMed:23224238}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G26945.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at midday. {ECO:0000269|PubMed:16786307}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Regulation -- ATRM (Manually Curated Target Genes) ? help Back to Top | ||||||
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Source | Target Gene (A: Activate/R: Repress) | |||||
ATRM | AT1G02340(R) |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q8GW32 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G26945 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK119110 | 1e-158 | AK119110.1 Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL21-46-D20. | |||
GenBank | BT004686 | 1e-158 | BT004686.1 Arabidopsis thaliana At1g26948 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_849712.1 | 2e-58 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Refseq | XP_010498979.1 | 2e-58 | PREDICTED: transcription factor PRE6 | ||||
Refseq | XP_020870718.1 | 2e-58 | transcription factor PRE6 | ||||
Swissprot | Q8GW32 | 1e-59 | PRE6_ARATH; Transcription factor PRE6 | ||||
TrEMBL | A0A178WEJ4 | 4e-57 | A0A178WEJ4_ARATH; PRE6 | ||||
TrEMBL | A0A1J3CGU5 | 4e-57 | A0A1J3CGU5_NOCCA; Transcription factor PRE6 | ||||
TrEMBL | D7KPM5 | 4e-57 | D7KPM5_ARALL; Uncharacterized protein | ||||
STRING | AT1G26945.1 | 6e-58 | (Arabidopsis thaliana) | ||||
STRING | fgenesh2_kg.1__2658__AT1G26945.1 | 6e-58 | (Arabidopsis lyrata) | ||||
STRING | XP_010498979.1 | 6e-58 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM259 | 28 | 225 | Representative plant | OGRP1877 | 12 | 40 |
Link Out ? help Back to Top | |
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Phytozome | AT1G26945.1 |
Entrez Gene | 839585 |
iHOP | AT1G26945 |
wikigenes | AT1G26945 |