PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G03680.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 706aa MW: 75306.6 Da PI: 5.9612

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G03680.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.2e-05	595	620	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ +C ++F+++ +L +H ++ + OGLUM03G03680.1 595 FQCEidYCRMTFKNRAELSVHKKNtC 620 89*******************99866 PP
2	zf-C2H2	12.3	0.00053	620	642	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cg++F+++ +L+rH++ H OGLUM03G03680.1 620 CTvkSCGRHFRSHKYLRRHQSIH 642 88889***************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence
MDHTTKKAEA EAEARGGTRG GHQKIPPSPR RGEAKRSSPP KFPNPPPLPP PPPCASAATP 60 RASSPPPPPP PPPPSRRPXX PAASAAWCHA AADDCAICDL TRSASPQVVA PDAIKQKGHI 120 AGRAPEPELR SDPRVGLAER TPVPEDQGRD IDDGPPAKRS LTFTDAAARL EGSGNVGAGV 180 ATEPAARVGA PVANGAVSGQ EDRAATCLAD ESAAELIATR VTSLVTGATA EPEVLKGASF 240 ANTNVTEPRV SERVPLVREA ATEPEDEVSM REVTEGALPD GEGAAKLEIT GGLSRESADK 300 MEVTKGISLV TEASADSELA QRVPTEPGVE LSLPEVTERV PVVTEDFTEL GDTFSGLHIT 360 GFASLDNEGS VEQEVTGSGS LVNEATEMEV KEGTCIFTRV ATELGDTGRV SACSGDGDIA 420 LDEPRPPDCV SEVANVNVGN AGEAVASKVQ PFRDNAESVG GSINSTGNGH VSSKSPTADE 480 AAPPGGCTDT PSVSCLSDIV ARSIGKSGRT DIICYVRRRG KRKLEMVEVK EENVEMDDSA 540 ICDQYDDKVA SERTGPCESV TSTAVSVEIK IADIKRELED NSTASKGKKK RAKRFQCEID 600 YCRMTFKNRA ELSVHKKNTC TVKSCGRHFR SHKYLRRHQS IHNDDMPYKC PWEGCSMAFK 660 WSWDRGEHFQ VHAGKRPYKC TTPGCSKIYK FVSDFTRHKR RCKPQR

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence

MDHTTKKAEA EAEARGGTRG GHQKIPPSPR RGEAKRSSPP KFPNPPPLPP PPPCASAATP  60
RASSPPPPPP PPPPSRRPXX PAASAAWCHA AADDCAICDL TRSASPQVVA PDAIKQKGHI  120
AGRAPEPELR SDPRVGLAER TPVPEDQGRD IDDGPPAKRS LTFTDAAARL EGSGNVGAGV  180
ATEPAARVGA PVANGAVSGQ EDRAATCLAD ESAAELIATR VTSLVTGATA EPEVLKGASF  240
ANTNVTEPRV SERVPLVREA ATEPEDEVSM REVTEGALPD GEGAAKLEIT GGLSRESADK  300
MEVTKGISLV TEASADSELA QRVPTEPGVE LSLPEVTERV PVVTEDFTEL GDTFSGLHIT  360
GFASLDNEGS VEQEVTGSGS LVNEATEMEV KEGTCIFTRV ATELGDTGRV SACSGDGDIA  420
LDEPRPPDCV SEVANVNVGN AGEAVASKVQ PFRDNAESVG GSINSTGNGH VSSKSPTADE  480
AAPPGGCTDT PSVSCLSDIV ARSIGKSGRT DIICYVRRRG KRKLEMVEVK EENVEMDDSA  540
ICDQYDDKVA SERTGPCESV TSTAVSVEIK IADIKRELED NSTASKGKKK RAKRFQCEID  600
YCRMTFKNRA ELSVHKKNTC TVKSCGRHFR SHKYLRRHQS IHNDDMPYKC PWEGCSMAFK  660
WSWDRGEHFQ VHAGKRPYKC TTPGCSKIYK FVSDFTRHKR RCKPQR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	517	523	RRRGKRK
2	517	524	RRRGKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	1e-40	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G03680.1