PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G33060.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 410aa MW: 41236.3 Da PI: 9.5312

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G33060.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	129.8	2.6e-40	66	242	1	137
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 aa+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ OGLUM02G33060.1 66 AAPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSAPahlra 159 689*******************************************************************999878888888886666688888 PP TCP 89 ...............................kaaksaakskksqksaasalnlakesrakarar..are.rtrekmriknkln 137 ++++s + + +s + l+++ + +a a a +r+ r++++m+++++++ OGLUM02G33060.1 160 lpspaaaarfgsradawdrvvslgfpsegpaSSSSSPSPLLLNFHSGSVGLDVQPSPSAAAAAAdlSRKrRWEQEMQQQQQQQ 242 99999999999999999999999999999964444444888888888888888885555444444666667777777777665 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MTMDVAGDAG GGRRPNFPLQ LLEKKEEQPC SSSAAGGGTG PSSAGGNGNN GSGPGGAGGE 60 MQVRKAAPKR SSTKDRHTKV EGRGRRIRMP ALCAARVFQL TRELGHKTDG ETIEWLLQQA 120 EPAVIAATGT GTIPANFTSL NISLRSSGSS LSAPAHLRAL PSPAAAARFG SRADAWDRVV 180 SLGFPSEGPA SSSSSPSPLL LNFHSGSVGL DVQPSPSAAA AAADLSRKRR WEQEMQQQQQ 240 QQQQQQQQQQ QQYQQQMAGY TQSQMPGTVW MVPSNSTQGG GPSGGGGGGG GGSGESIWTF 300 PQMSSAAAAA AVYRGSVPSG LHFMNFPAPM ALLPGQQLGL GPVGGGGGGG GGGEGHMGIL 360 AALNAYRTQA ATDAAGEQGG GGGGGGSSQQ QHGGGGGGGE RHQSISTSDS

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MTMDVAGDAG GGRRPNFPLQ LLEKKEEQPC SSSAAGGGTG PSSAGGNGNN GSGPGGAGGE  60
MQVRKAAPKR SSTKDRHTKV EGRGRRIRMP ALCAARVFQL TRELGHKTDG ETIEWLLQQA  120
EPAVIAATGT GTIPANFTSL NISLRSSGSS LSAPAHLRAL PSPAAAARFG SRADAWDRVV  180
SLGFPSEGPA SSSSSPSPLL LNFHSGSVGL DVQPSPSAAA AAADLSRKRR WEQEMQQQQQ  240
QQQQQQQQQQ QQYQQQMAGY TQSQMPGTVW MVPSNSTQGG GPSGGGGGGG GGSGESIWTF  300
PQMSSAAAAA AVYRGSVPSG LHFMNFPAPM ALLPGQQLGL GPVGGGGGGG GGGEGHMGIL  360
AALNAYRTQA ATDAAGEQGG GGGGGGSSQQ QHGGGGGGGE RHQSISTSDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	8e-45	TCP family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G33060.1