PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G32960.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 232aa    MW: 27394.9 Da    PI: 5.638
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G32960.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK84.41.1e-26113163252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ek++++e +s+yF lpik+AA+eL+v+lT+LKr+CR +GI+RWPhRk+ksl
  OGLUM02G32960.1 113 EKTLTFELVSQYFCLPIKQAAQELNVGLTLLKRRCRVLGIPRWPHRKVKSL 163
                      799**********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MEKWRFYGGH QFQSYSFHEE ENLFQDWSLD YLLLGEDEPF FTHHFSTSVH SNFVQDELYT  60
LFDGDILSIW GDMKEDAYHR SDKDGGEKEE KLDHEKAMEL QLQRLPSGRQ SGEKTLTFEL  120
VSQYFCLPIK QAAQELNVGL TLLKRRCRVL GIPRWPHRKV KSLETLIKNV QELGMETGQD  180
EDNTRNAVEM LQQTKKLIEQ SPDAKLDDWT KMLRQACFKE NYKRRRLLAI EG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223227KRRRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.14e-43Nin-like family protein