PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G26190.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 256aa    MW: 27021.8 Da    PI: 8.0253
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G26190.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY216.58.4e-67202125170
            YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshl.deslkee.....................lleelk 76 
                      s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+      +a     + ++ ++                     l+e+  
  OGLUM02G26190.1  20 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPAnQLHFGPSllsptsphglldevafqtpslLMEQAA 113
                      579********************************************99966665443204455555777789999777777766653233222 PP

            YABBY  77 veeenlksnvekeesastsvssekl....senedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfP 164
                      +++ +  +  +++++as+  +++++    + +++ e+p+  p  ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP
  OGLUM02G26190.1 114 SASLSSITGRSSSSCASNA-PAMQMppakPVQQEPELPKNAPasANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 206
                      2222222222233333333.3333478777888899999877678************************************************* PP

            YABBY 165 kihfgl 170
                      +ihfgl
  OGLUM02G26190.1 207 HIHFGL 212
                      ****97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MSSSSSSSAV FPLDHLAAPS PTEQLCYVHC NCCDTILAVG VPCSSLFKTV TVRCGHCANL  60
LSVNLRGLLL PAPAPAPANQ LHFGPSLLSP TSPHGLLDEV AFQTPSLLME QAASASLSSI  120
TGRSSSSCAS NAPAMQMPPA KPVQQEPELP KNAPASANRP PEKRQRVPSA YNRFIKDEIQ  180
RIKAGNPDIS HREAFSAAAK NWAHFPHIHF GLMPDQGFKK TFKPQDGSED ILLKDSLYAA  240
AAAAAAAAAN MGVTPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.14e-61YABBY family protein