PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G25890.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 471aa    MW: 50544.5 Da    PI: 8.6257
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G25890.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-19223273256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  OGLUM02G25890.1 223 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 273
                      59******9.**********955...5**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    
MDAVDRGGGG GGARGHGRRW KGKGVSAAIS SSAAETQQPV PVLEDAPAAA ALLRPQKKIR  60
SPDRRLQRSI SSLSLAPASP DSSSVSNPMS PPAMSLPNQP PSSRHIFPFA YDPSPGAAAP  120
RLLPLLQYSS LYPQPLLPQQ QSPLQNQQMI SFGSSQQQQK QQPQFGAASP LFPPQFLPPE  180
EQQRLLLRYW SEALNLSPRG VRGGALPPSL YQHLLRAPGP PKLYRGVRQR HWGKWVAEIR  240
LPRNRTRLWL GTFDTAEDAA MAYDREAFKL RGENARLNFP DLFLGKGRTG GSGRTSASAA  300
ASCSSSSSSA PPTPDESHTQ QAQPQPQQPT EESSNTEPKP LLFVAEQDGI PEPELNPQLQ  360
TAEQHGSDGN TAMFQPSVTS GGVWGPADEA WFSAWGPGSS VWDYDMDSAH GLLLQSRLAG  420
EQTGMDYAYT APEVLVAPVP AAGTAMATAA SSSLPPRPPP PCHSPTFAWK D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.17e-37ERF family protein