PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G23790.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

DBB

Protein Properties

Length: 256aa MW: 27506.7 Da PI: 5.2847

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G23790.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.5	4.9e-07	4	46	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e+ + C ++ lC+ C +e H H++ p OGLUM02G23790.1 4 QCDACESAAAAVVCCADEAALCAACDVEVHAAnklagkHQRLP 46 7*****9*******************6678888898877 PP
2	zf-B_box	27	9.1e-09	54	85	3	34
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ ++ek + +fC +++ l+C+dC + +H OGLUM02G23790.1 54 LPRCDVCQEKAAFIFCVEDRALFCRDCDEPIH 85 689**************************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MKIQCDACES AAAAVVCCAD EAALCAACDV EVHAANKLAG KHQRLPLEAL SARLPRCDVC 60 QEKAAFIFCV EDRALFCRDC DEPIHVPGTL SGNHQRYLAT GIRVGFASAS PCDGGSDAHD 120 SDHHAPPMGS SEHHHHHQQP APTVAVDTPS PQFLPQGWAL QKESSPPLGF QELEWFADID 180 LFHNQAPKGG AAAGRTTAEV PELFASQATN DVAYYRPPTR TAAAAFTAAT GFRQRKKARV 240 ELPDDEEDYL IVPDLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06040.1	7e-42	DBB family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G23790.1