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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OGLUM02G23240.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | B3 | ||||||||
| Protein Properties | Length: 1071aa MW: 121169 Da PI: 9.4197 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 31.6 | 2.8e-10 | 1008 | 1065 | 35 | 95 |
EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
++l+d+ r W v + k+ + +t+GWk F+ an+L++gD++ F + +e el ++
OGLUM02G23240.1 1008 VVILKDPMRRLWPVFY--HDKPVFVGFTAGWKPFAAANNLQAGDVCKFVKEM-DEDELAFQ 1065
689*************..9***9*************************9443.44444444 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 1071 aa Download sequence |
MDGAVRGQGC VGRLRSFNKT KKKNRNCSDD MRNGDDEEKK KYSHHDMKKN LRNDANEEKR 60 KSSDDMRDGD FEEKKCSRHD MKKNLRNDAN EERRKSSDDM RDGDDEEKKK CSRQDMKKNL 120 RNDADEEKRK SSDDMRDGDD EEKKKRSRHD MKKNSRNDAD EEKRKRKRKC SDDLKKSVLN 180 DASKEATSHS DWRKNRKAGS DAEQRGKKLL NGDKKAKSRK VTTPFFEKMR KIKMQRTSNQ 240 NGEKNMKSDG DSYKKTVPLS VNKGKMEKDG TNKRTLSNTL VAKERKMRPS DSMEMKMKKK 300 KRDASFVQPD ERTAQTFSTK NKEKKRKAPS TPLKREQKER VASSDNKKET KKACIVAIGN 360 EKKNCRDGKK KKRKAAFAFF KFVRDEFEEL LFIPPAVAPS LKDLIDRHVY LEDSEGKCSK 420 IRLSVVDGSL AFYEGWNSFV SEHCIKWGEF LLFEYTPEST FSVRVFGIDS CERLHFSVKS 480 GGKGAVKKRK ERHTLSDDLI SHYNGQYQDS EDIHDGPNVS GESPRSKEPK ITVDAEIGTR 540 NLVAKSINAA SETQDSERVE SGIGYGSLGA LGNKVRNLSN GECDTRSDSV FCIQEKTRRS 600 EVIIISDEAY STQVDEDTMK QTAPSEASEI HHVTINTQKD LERVVDGVCC ESSVALNNKM 660 GNLILGEPKN KNISPACSTE KTNGSEITPT TGAIPLTQEN IDTVKLNTIS CFEEDRSTTR 720 ESELAAAIPT TSETHDSDKD LGQKHQRNSV QVNSIIAVDK YPNDSEMNIS GNIFRIYEAP 780 AGTRCLEKWK RGIVNGRAAL DDIGQVRPEK TQKAGEKLVG NCGAMGESPV DLRIESDVTD 840 TCLKPILNIP IEELSILDSV SISKCGRSRT EVNHLFNQKG ATVQLQTKKE PLKPTGSSGN 900 RKGDKIAVSV NRVFAHQSEL QIPQQENGNF TSCVTPVALL PAKAELLDLD DHSLQFCIPS 960 TIQKWLVFSY SVVQWMQFVE FMLIAVRAEL PKSLPITCRQ KGRYDRNVVI LKDPMRRLWP 1020 VFYHDKPVFV GFTAGWKPFA AANNLQAGDV CKFVKEMDED ELAFQVYITR K |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 128 | 146 | KRKSSDDMRDGDDEEKKKR |
| 2 | 143 | 169 | KKKRSRHDMKKNSRNDADEEKRKRKRK |
| 3 | 143 | 161 | KRKSSDDMRDGDDEEKKKR |
| 4 | 144 | 162 | KRKSSDDMRDGDDEEKKKR |
| 5 | 163 | 169 | KRKRKRK |
| 6 | 164 | 169 | RKRKRK |
| 7 | 298 | 324 | KKKRSRHDMKKNSRNDADEEKRKRKRK |
| 8 | 299 | 325 | KKKRSRHDMKKNSRNDADEEKRKRKRK |
| 9 | 369 | 374 | KKKKRK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G18960.1 | 2e-11 | B3 family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OGLUM02G23240.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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