PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G19970.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 379aa MW: 42547.6 Da PI: 8.8175

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G19970.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	94.2	1.6e-29	64	153	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY+ YA ++GFsvr+++ +ks+++geit+r+fvCs+eg+++++k++ +++r++++ trtgC+a+l++++++ ++k+ev+ +e +HnH+l+ OGLUM02G19970.1 64 EFYRYYAWKLGFSVRREYANKSRKTGEITSRKFVCSREGFKAPDKRT-NHTRTPQPDTRTGCHANLVIRRKNdTSKYEVYAFEAQHNHPLF 153 6*****************************************999.******************9999*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MSSPSPEPPP NPTPVPPPPP PAPSGNTAVE DSEAGPCIPR VQAATGDYTP WLGQEFASEH 60 EAYEFYRYYA WKLGFSVRRE YANKSRKTGE ITSRKFVCSR EGFKAPDKRT NHTRTPQPDT 120 RTGCHANLVI RRKNDTSKYE VYAFEAQHNH PLFIPSCANP LQRKLSDVQS SDADNSGSEF 180 KACINDYEEE VELFTAWEAM ISKYNLHSNR RKKKGRNAKS QRKSCIEKGL QKTKKVQPEQ 240 SPIQYTMLDA TQPGNVLFQG LDISNPFPMG QLNYGGVQPQ PGLCPSLPTV SRELGFAAYL 300 SQPSSNSQHN QQKSTALLKV IVHICFNLQY NSWDRTGPVE DQINFSNSYQ SVIEATKNSH 360 LPGYIHQQHV HAMLRSTTS

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MSSPSPEPPP NPTPVPPPPP PAPSGNTAVE DSEAGPCIPR VQAATGDYTP WLGQEFASEH  60
EAYEFYRYYA WKLGFSVRRE YANKSRKTGE ITSRKFVCSR EGFKAPDKRT NHTRTPQPDT  120
RTGCHANLVI RRKNDTSKYE VYAFEAQHNH PLFIPSCANP LQRKLSDVQS SDADNSGSEF  180
KACINDYEEE VELFTAWEAM ISKYNLHSNR RKKKGRNAKS QRKSCIEKGL QKTKKVQPEQ  240
SPIQYTMLDA TQPGNVLFQG LDISNPFPMG QLNYGGVQPQ PGLCPSLPTV SRELGFAAYL  300
SQPSSNSQHN QQKSTALLKV IVHICFNLQY NSWDRTGPVE DQINFSNSYQ SVIEATKNSH  360
LPGYIHQQHV HAMLRSTTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-21	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G19970.1