PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G06150.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 348aa MW: 37227.1 Da PI: 7.9055

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G06150.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95	5.2e-30	192	251	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ k++++pr+Y+rC++a Cpvkkkv+rsaed+++++ tYegeHnh OGLUM02G06150.1 192 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApACPVKKKVQRSAEDNTILVATYEGEHNHG 251 58*************************99**************************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MDPWISTQPS LSLDLRVGLP ATAAVAMVKP KVLVEEDFFH QQPLKKDPEV AALEAELKRM 60 GAENRQLSEM LAAVAAKYEA LQSQFSDMVT ASANNGGGGG NNPSSTSEGG SVSPSRKRKS 120 ESLDDSPPPP PPPHPHAAPH HMHVMPGAAA AGYADQTECT SGEPCKRIRE ECKPKISKLY 180 VHADPSDLSL VVKDGYQWRK YGQKVTKDNP CPRAYFRCSF APACPVKKKV QRSAEDNTIL 240 VATYEGEHNH GQPPPPLQSA AQNSDGSGKS AGKPPHAPAA APPAPVVPHR QHEPVVVNGE 300 QQAAAASEMI RRNLAEQMAM TLTRDPSFKA ALVTALSGRI LELSPTKD

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MDPWISTQPS LSLDLRVGLP ATAAVAMVKP KVLVEEDFFH QQPLKKDPEV AALEAELKRM  60
GAENRQLSEM LAAVAAKYEA LQSQFSDMVT ASANNGGGGG NNPSSTSEGG SVSPSRKRKS  120
ESLDDSPPPP PPPHPHAAPH HMHVMPGAAA AGYADQTECT SGEPCKRIRE ECKPKISKLY  180
VHADPSDLSL VVKDGYQWRK YGQKVTKDNP CPRAYFRCSF APACPVKKKV QRSAEDNTIL  240
VATYEGEHNH GQPPPPLQSA AQNSDGSGKS AGKPPHAPAA APPAPVVPHR QHEPVVVNGE  300
QQAAAASEMI RRNLAEQMAM TLTRDPSFKA ALVTALSGRI LELSPTKD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	120	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	2e-55	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G06150.1