PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G00360.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 705aa MW: 74654.6 Da PI: 6.2999

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G00360.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	100.7	1.2e-31	526	610	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev aLi++r+ +e+r+++ lk+plWeevs++m++ g++r++k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+ OGLUM02G00360.1 526 RWPKHEVEALIRVRTGLEDRFQEPGLKGPLWEEVSARMAAAGYRRNAKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELD 610 8******************************************************************98.99999*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence
MQSGYGGVSE FQQYIMDPGA FAMSAPPQPA QAAAAAAAAA AAAAGGQELG APFRYQPLHH 60 HALPQHHHHH HPPPQMPPHL AHFGGAGGIP FTQQLLHQAA AAGHHPHLQL FHEQHHHQKH 120 QQQPPPPARW APQHHHHHHP HHHLGLDVEA AVPESSGAGA GSAASGAAAP PGVPPFLAAA 180 MSFKLGVDGG GGSGATGGTD DALNDGGGAG SGMMLHGGGG GGGGGGDDEA ATESRLRRWP 240 GDEETSIKEP TWRPLDIDYI HSSSSSKRAP PKDKPATPDS PAPPPPANYF KNKPDDNAAA 300 ASAASAGAVN YKLFSELEAI YKPGNGGAQT GSGSGLTGDD NAMLAPPMAD LPDAAAADPP 360 HLNTSETSAG EDAHAVVQPQ PQTQQPSGAD AARRKRKRRR QEQLSASASF FERLVQRLME 420 HQESLHRQFL DTMERRERER AARDEAWRRQ EADKFAREAA ARAQDRASAA ARESAIIAYL 480 EKISGETITL PPPAANPAPG ADEQDGVGKE VVAYDGEGSL QLSSSRWPKH EVEALIRVRT 540 GLEDRFQEPG LKGPLWEEVS ARMAAAGYRR NAKRCKEKWE NINKYFRKAK ESGKKRPAHA 600 KTCPYFDELD RLYSRSGSGG GGGSSSAGGN GGEEAKGSSE LLDAVVKYPD VRCAPPGFPF 660 DGEQNEEGRT KDDGDGDGDE EDVRVGVGRA TDDHDDQVDE SHDDH

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence

MQSGYGGVSE FQQYIMDPGA FAMSAPPQPA QAAAAAAAAA AAAAGGQELG APFRYQPLHH  60
HALPQHHHHH HPPPQMPPHL AHFGGAGGIP FTQQLLHQAA AAGHHPHLQL FHEQHHHQKH  120
QQQPPPPARW APQHHHHHHP HHHLGLDVEA AVPESSGAGA GSAASGAAAP PGVPPFLAAA  180
MSFKLGVDGG GGSGATGGTD DALNDGGGAG SGMMLHGGGG GGGGGGDDEA ATESRLRRWP  240
GDEETSIKEP TWRPLDIDYI HSSSSSKRAP PKDKPATPDS PAPPPPANYF KNKPDDNAAA  300
ASAASAGAVN YKLFSELEAI YKPGNGGAQT GSGSGLTGDD NAMLAPPMAD LPDAAAADPP  360
HLNTSETSAG EDAHAVVQPQ PQTQQPSGAD AARRKRKRRR QEQLSASASF FERLVQRLME  420
HQESLHRQFL DTMERRERER AARDEAWRRQ EADKFAREAA ARAQDRASAA ARESAIIAYL  480
EKISGETITL PPPAANPAPG ADEQDGVGKE VVAYDGEGSL QLSSSRWPKH EVEALIRVRT  540
GLEDRFQEPG LKGPLWEEVS ARMAAAGYRR NAKRCKEKWE NINKYFRKAK ESGKKRPAHA  600
KTCPYFDELD RLYSRSGSGG GGGSSSAGGN GGEEAKGSSE LLDAVVKYPD VRCAPPGFPF  660
DGEQNEEGRT KDDGDGDGDE EDVRVGVGRA TDDHDDQVDE SHDDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	393	398	RRKRKR
2	393	399	RRKRKRR
3	394	399	RKRKRR
4	394	400	RRKRKRR
5	395	400	KRKRRR
6	396	400	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	4e-39	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G00360.1