PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G46570.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 319aa MW: 33402.7 Da PI: 6.7448

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G46570.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.1	1.5e-38	83	168	3	88
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t++WLlqqa+pai ++tgt++++as+ +++ s + ns + OGLUM01G46570.1 83 PKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGTIPASALASVAPSLPSPNSALS 168 6999***********************************************************99999766222222222222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MDPKFPPPPP LNKTEPTTTT TNQQHHHDEQ QQQHRLQIQV HPQQQEQQDG GGGGGKDQQQ 60 QQQQMQVVVA AAAGERRMQG LGPKRSSNKD RHTKVDGRGR RIRMPALCAA RIFQLTRELG 120 HKSDGETVQW LLQQAEPAIV AATGTGTIPA SALASVAPSL PSPNSALSRS HHHHHHMWAA 180 APPTASAGFA GAGFSGADSG VIGGIMQRMG IPAGIELQGG GAGGLGGGGG GGGGHIGFAP 240 MFAGHAAAAA AMPGLELGLS QDGHIGVLAA QSLSQFYHQV GAAGQLQHQH QHHHQQQQQQ 300 QEDGEDDRDD GESDEESGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	3e-39	TCP family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G46570.1