PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G44820.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 691aa MW: 71298.7 Da PI: 7.0671

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G44820.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.1	1.6e-11	281	337	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g OGLUM01G44820.1 281 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 337 57*****************4444.2455535555.779999************98 PP
2	AP2	46.7	7.9e-15	380	431	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g OGLUM01G44820.1 380 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 431 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence
MATMNNWLAF SLSPQDQLPP SQANSTLISA AATTTTAGDS SAGDVCFNIP QDWSMRGSEL 60 SALVAEPKLE DFLGGISFSE QHHHGGKGGV IPSSAAACYA SSGSSVGYLY PPPSSSSLQF 120 ADSVMVATSS PVVAHDGVSG GGMVSAAAAA AASGNGGIGL SMIKNWLRSQ PAPQPAQALS 180 LSMNMAGTTT AQGGGAMALL AGAGERGRTT PASESLSTSA HGATTATMAG GRKEINEEGS 240 GSAGAVVAVG SESGGSGAVV EAGAAAAAAR KSVDTFGQRT SIYRGVTRHR WTGRYEAHLW 300 DNSCRREGQT RKGRQGGYDK EEKAARAYDL AALKYWGPTT TTNFPVNNYE KELEEMKHMT 360 RQEFVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE 420 AYDIAAIKFR GLNAVTNFDM SRYDVKSILD SAALPVGTAA KRLKDAEAAA AYDVGRIASH 480 LGGDGAYAAH YGHHHHSAAA AWPTIAFQAA AAPPPHAAGL YHPYAQPLRG WCKQEQDHAV 540 IAAAHSLQDL HHLNLGAAAA AHDFFSQAMQ QQHGLGSIDN ASLEHSTGSN SVVYNGDNGG 600 GGGGYIMAPM SAASATATAV ASSHDHGGDG GKQVQMGYDS YLVGADAYGG GGAGRMPSWA 660 MTPASAPAAT SSSDMTGVCH GAQLFSVWND T

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence

MATMNNWLAF SLSPQDQLPP SQANSTLISA AATTTTAGDS SAGDVCFNIP QDWSMRGSEL  60
SALVAEPKLE DFLGGISFSE QHHHGGKGGV IPSSAAACYA SSGSSVGYLY PPPSSSSLQF  120
ADSVMVATSS PVVAHDGVSG GGMVSAAAAA AASGNGGIGL SMIKNWLRSQ PAPQPAQALS  180
LSMNMAGTTT AQGGGAMALL AGAGERGRTT PASESLSTSA HGATTATMAG GRKEINEEGS  240
GSAGAVVAVG SESGGSGAVV EAGAAAAAAR KSVDTFGQRT SIYRGVTRHR WTGRYEAHLW  300
DNSCRREGQT RKGRQGGYDK EEKAARAYDL AALKYWGPTT TTNFPVNNYE KELEEMKHMT  360
RQEFVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE  420
AYDIAAIKFR GLNAVTNFDM SRYDVKSILD SAALPVGTAA KRLKDAEAAA AYDVGRIASH  480
LGGDGAYAAH YGHHHHSAAA AWPTIAFQAA AAPPPHAAGL YHPYAQPLRG WCKQEQDHAV  540
IAAAHSLQDL HHLNLGAAAA AHDFFSQAMQ QQHGLGSIDN ASLEHSTGSN SVVYNGDNGG  600
GGGGYIMAPM SAASATATAV ASSHDHGGDG GKQVQMGYDS YLVGADAYGG GGAGRMPSWA  660
MTPASAPAAT SSSDMTGVCH GAQLFSVWND T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-115	AP2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G44820.1