PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G42800.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 372aa    MW: 38513.1 Da    PI: 6.5135
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G42800.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.5e-20150199255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  OGLUM01G42800.1 150 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 199
                      7********.**********7.....337************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    
MTVAGASELM SGYYQAQEMS TMVSALARVV AGGGGGYYQA QEMSTMVSAL ARVVAGGGGD  60
GDQWAWSSPS PSPSSSAAAA AARGVQERRR EEQAMHELAG YACGGAPSPE FAGSEQSSDT  120
QSASAATMDE HHSPVGGGGN AEGPDTPRRR YRGVRQRPWG KWAAEIRDPH KAARVWLGTF  180
ETAEAAARAY DEAALRFRGS RAKLNFPEDA RLYPAAATTT TAAPPPAPVA AASPSAAIYP  240
GASQSAEYLR YQMLLQGRLT TATPNQGTLL PFYGGGGGGG SMTNPYGGGG GGAMSGFLGS  300
YYSFPTPSVS VATVPSSTSS APGNYYSSHG GSHQSMSAAE EWNWENALVY PATAASWSES  360
SYHHHPPPPH TQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.16e-20ERF family protein