PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G41620.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 804aa MW: 88305 Da PI: 8.3721

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G41620.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.7e-17	524	566	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT+e+d l++a+k +G++ W+ Iar+++ gR+++ +k++w+ OGLUM01G41620.1 524 KDVWTEEDDRMLIEAHKTYGNR-WSVIARCLP-GRSENAVKNHWN 566 578*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence
MPTLRSATAS ASTAGTASPT AIATPRSAKR RLTSPRRAAG SPDASQFTSP HKSPNVGIVG 60 TPKLLSASPR SSRKRLYGDF VAAEKPKWNP RGESPESHFS RAQSSDWDLT KEFICSADPA 120 QMQVVKEALH VATVPSCGLV CRDHEQSRVL EFCKGCVEQE RAGSLYVCGC PGTGKTLSIN 180 KVKESVARWA DETGMETPDA LSINCTSLAK THEIFSKILA KFQTRKKATC KLSPLQQLQT 240 MFSHKESAPR RMLLVVVDEM DYLITRDRAV LHDLFMLTTY QFSRCILIGI ANAIDLADRF 300 LPKLESLNCK PLVVTFRAYS KDQISDIIKH RLKVLEYDVF EPLALEFCAR KVAAASGDMR 360 KALGVCRSAV EVFEARLQES SDQEFGLVTC ITNKVVPVKE ITFVHVYIDV TFDHMDIALS 420 KAFKSPVVDS ILCLPQHQQM VLCALANTFH HCKKKATTLG ELNKSYIEIC RSTQVPAVGM 480 LEFSNMCMVL SDQGFMKLGQ SKEDKLRRVM LQINSSDITF AFKKDVWTEE DDRMLIEAHK 540 TYGNRWSVIA RCLPGRSENA VKNHWNATKR SLKSKRRMKK KSVQVVNSPP GQLSPLEEYI 600 RSQYPSAVET TPPPPAVPAP PSDVIVHGAG SVSAGPTVAT QEPTGTNPSE MGIYLGLGNP 660 AGPTTQQLAA MNLNMSLAPD LNAYNDQREG YYLPFVPQGN LHYGMHVPAP PVQQQQQQGI 720 SVDQGLHSSC LSLYHPFPGT HPVSLDFGCQ SSNHANAGGY YSEAGPSSGS GSGDPDDVDV 780 IQMASRQFLM PSEAEVTLDL TRFK

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence

MPTLRSATAS ASTAGTASPT AIATPRSAKR RLTSPRRAAG SPDASQFTSP HKSPNVGIVG  60
TPKLLSASPR SSRKRLYGDF VAAEKPKWNP RGESPESHFS RAQSSDWDLT KEFICSADPA  120
QMQVVKEALH VATVPSCGLV CRDHEQSRVL EFCKGCVEQE RAGSLYVCGC PGTGKTLSIN  180
KVKESVARWA DETGMETPDA LSINCTSLAK THEIFSKILA KFQTRKKATC KLSPLQQLQT  240
MFSHKESAPR RMLLVVVDEM DYLITRDRAV LHDLFMLTTY QFSRCILIGI ANAIDLADRF  300
LPKLESLNCK PLVVTFRAYS KDQISDIIKH RLKVLEYDVF EPLALEFCAR KVAAASGDMR  360
KALGVCRSAV EVFEARLQES SDQEFGLVTC ITNKVVPVKE ITFVHVYIDV TFDHMDIALS  420
KAFKSPVVDS ILCLPQHQQM VLCALANTFH HCKKKATTLG ELNKSYIEIC RSTQVPAVGM  480
LEFSNMCMVL SDQGFMKLGQ SKEDKLRRVM LQINSSDITF AFKKDVWTEE DDRMLIEAHK  540
TYGNRWSVIA RCLPGRSENA VKNHWNATKR SLKSKRRMKK KSVQVVNSPP GQLSPLEEYI  600
RSQYPSAVET TPPPPAVPAP PSDVIVHGAG SVSAGPTVAT QEPTGTNPSE MGIYLGLGNP  660
AGPTTQQLAA MNLNMSLAPD LNAYNDQREG YYLPFVPQGN LHYGMHVPAP PVQQQQQQGI  720
SVDQGLHSSC LSLYHPFPGT HPVSLDFGCQ SSNHANAGGY YSEAGPSSGS GSGDPDDVDV  780
IQMASRQFLM PSEAEVTLDL TRFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	3e-16	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G41620.1