PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G40530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 167aa MW: 17302.3 Da PI: 6.2295 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00095 | 43 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H OGLUM01G40530.1 43 FECKTCSKRFPSFQALGGHRTSH 65 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00089 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg Fs L H+r+H OGLUM01G40530.1 92 HECAVCGVEFSMGQALGGHMRRH 114 78********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence |
MESLRVHASA LLSLSSPAAS ASQPTSSSST PAGRRALAAE GVFECKTCSK RFPSFQALGG 60 HRTSHTRLQA KLLSDPAAAA AAAAERDRAR VHECAVCGVE FSMGQALGGH MRRHRGETGT 120 TTVVLADADD SGGATVPQPP EPMPDLNYPP LEDAGDGSEP ELLNLLV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 1e-24 | C2H2 family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM01G40530.1 |