PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G39350.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 265aa    MW: 29769.3 Da    PI: 7.1435
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G39350.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY781.1e-2452112258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnh 58 
                      +Dgy+WrKYGqK+++g+ fpr YYrCt++   gCp+ k+ve+  +edp ++ ++Y++eH++
  OGLUM01G39350.1  52 HDGYQWRKYGQKMIRGNSFPRCYYRCTYHqdhGCPASKHVEQHnSEDPPLFRVIYTNEHTC 112
                      7***************************98999*******9852689************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MVKRSDNMDS SSECSRGAHK RLLQDSRSYD QENAMKKVCI GTRTEYTYAP YHDGYQWRKY  60
GQKMIRGNSF PRCYYRCTYH QDHGCPASKH VEQHNSEDPP LFRVIYTNEH TCGTSNSASD  120
YMASSMQIQQ IADASLRKAQ AAERLRKAEV ETPRLMHSPP PRCSGGYNMA MKEEKDVIVS  180
SLLTVIRGCH IAESAGNNSA AALPANRPPP AVARSDHHSC SYAISPELLP ASDDLTLDFI  240
LDSVLDPHWV EPLDLAWFKE STHTG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-20WRKY family protein