PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G35080.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 405aa MW: 44274.4 Da PI: 5.1472

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G35080.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.7	6.7e-30	187	245	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ eHnh+ OGLUM01G35080.1 187 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYSFEHNHP 245 69***********************998**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MRTYTFMCRA PPHTDPLLFF PPFSSLLFFS SSVRDTALSL WVGGVIITKA TKGARRDIIY 60 SLGKRWISFS RFGLFIRSWS VCAPGVVVVM AAGEEVMDRS TSAEDGYCSA GTDSPRAESV 120 DEQGAAEESS PRGGQKRELP SPSASPSSPL PPAAKRSRRS VEKRVVSVPI AECGDRPKGA 180 GEGPPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSRAD PTVLLVTYSF 240 EHNHPWPQPK SSSCHASKSS PRSTAPKPEP AADGQQPEPA ENESSASAEL EVPEPEPEQE 300 SEPVVKQEEE QKEEQKAVVE PAAVTTTVAP APAVEEEDEN FDFGWIDQYH PTWHRSYAPL 360 LPPEEWEREL QGDDALFAGL GELPECAVVF GRRRELGLAA TAPCS

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MRTYTFMCRA PPHTDPLLFF PPFSSLLFFS SSVRDTALSL WVGGVIITKA TKGARRDIIY  60
SLGKRWISFS RFGLFIRSWS VCAPGVVVVM AAGEEVMDRS TSAEDGYCSA GTDSPRAESV  120
DEQGAAEESS PRGGQKRELP SPSASPSSPL PPAAKRSRRS VEKRVVSVPI AECGDRPKGA  180
GEGPPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSRAD PTVLLVTYSF  240
EHNHPWPQPK SSSCHASKSS PRSTAPKPEP AADGQQPEPA ENESSASAEL EVPEPEPEQE  300
SEPVVKQEEE QKEEQKAVVE PAAVTTTVAP APAVEEEDEN FDFGWIDQYH PTWHRSYAPL  360
LPPEEWEREL QGDDALFAGL GELPECAVVF GRRRELGLAA TAPCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	2e-37	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G35080.1