PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G34750.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 387aa    MW: 40724.6 Da    PI: 6.507
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G34750.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.39.2e-18264298135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  OGLUM01G34750.1 264 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 298
                      99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    
MEVTAEFGGA YYGGAAGREK KALQQGCGDH FAVDDLLVLP YDEEDETTRE GEATGGKEEA  60
AGFGNASADS STITALDSCS NSFGLADGDF PGELCEPYDQ LAELEWLSNY MNEGDDAFAT  120
EDLQKLQLIS GIPSGGFSTA SVPSAQVQAA SAAASMAVQP GGFLPEAPVP AKARSKRSRA  180
APGNWSSRLL VLPPPPASPP SPASMAISPA ESGVSVHAFP IKKPSKPAKK KDAPAPPAQA  240
QLSSVPVHSG GSAPAAAAGE GRRCLHCETD KTPQWRTGPM GPKTLCNACG VRYKSGRLVP  300
EYRPAASPTF MVSKHSNSHR KVLELRRQKE MHQQTPHHHQ PQVAAAGGVG SLMHMQSSML  360
FDGVSPVVSG DDFLIHHHLR TDFRPPI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.18e-49GATA family protein