PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G30050.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 330aa MW: 35876.3 Da PI: 10.1778

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G30050.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.1	1.1e-13	18	104	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ e+ aL++a ++ +l+rg+l++p+W+ev++++ ++r r+ +qCk++ + l+k+yk+++++ s++ ++++l+ OGLUM01G30050.1 18 CWSDGETAALVDAWGRRYVDLNRGSLRQPQWREVAEAVnarpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGTP------SSWYFYRDLD 104 7*****************************************999999******************9998775......4588888876 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MDGKPPPPNP NLPYREDCWS DGETAALVDA WGRRYVDLNR GSLRQPQWRE VAEAVNARPG 60 ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGTPSSWYFY RDLDMLVGPT LSAAAGGGGS 120 AKKPSPPRGL PMMRRRLESP SRSPSPPSPT PAVALPLPNY RQASNLPSAG LLFNKMAAAA 180 AAESDSEDGY NNPNNNYEDD EDDGSQQSAS RSVSSRSGGV AAAGAGGGGV SSSKRKRGGG 240 GGGGFGELAR AVETFAEMYE RMEFAKQRHA EEMERQRIKF LKDLELKRMQ AFVDVQLQLA 300 KAKHRKHPDG ATEMLMSLAA LPFLSTPAYL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	2e-27	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G30050.1