PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G28930.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 326aa    MW: 33914.8 Da    PI: 7.153
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G28930.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.11.4e-26152213159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg++WrKYGqK++ g+++pr+Y+rCt++   gC++ k+v+r++ dp +++++Y+g+H++ 
  OGLUM01G28930.1 152 LDDGFSWRKYGQKDILGAKYPRAYFRCTHRhtqGCHASKQVQRADGDPLLFDVVYHGDHTCA 213
                      59***************************98999*************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MEGSSSDGSR YGGAGRCALV AELVKMQGMV RQLEAEMGTH GGGGGGGGGA APMAAGADER  60
CRALVSGLLS SIDRSISIAR SCCTEAAAAG RLTQPAGAAP ESPPSADGSA GSDLGADSRC  120
RANAAGPCKK RKTLPKWSKQ VKVRSVQDVG PLDDGFSWRK YGQKDILGAK YPRAYFRCTH  180
RHTQGCHASK QVQRADGDPL LFDVVYHGDH TCAHGVRSAA AAIDGQAAAS AEQKHQPTPP  240
QEQNAVSVAF TSMAVVNAST SSPFVSPATS DCQISYELGG GSMAGVRNVP DVELASKTNS  300
SMGDDMEFMF SLDADFLDTY KYSSYF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-38WRKY family protein