PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G28380.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 493aa    MW: 51830.1 Da    PI: 4.9652
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G28380.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS419.92.2e-128844471374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                      lv+lL++cA a+++gd++la+a La  +    a ++++ + R+a +ft AL++rl+       + ++p +t     +e+++ ++ f+e++P+lk
  OGLUM01G28380.1  84 LVHLLMSCAGAIEAGDHALASAQLADSHAAlaAVSAASGIGRVAVHFTTALSRRLFP------SPVAPPTT----DAEHAFLYHHFYEACPYLK 167
                      68***********************9998875667779******************9......44444444....4899999************ PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      f+h+taNqaIlea++g+++vH+iDf+++qGlQWpaL+qaLa Rp+gpp lRiTg+g+p+++ ++el+ +g rLa++A++++v+f+f+ ++a++l
  OGLUM01G28380.1 168 FAHFTANQAILEAFHGCDHVHVIDFSLMQGLQWPALIQALALRPGGPPFLRITGIGPPSPTGRDELRDVGLRLADLARSVRVRFSFRGVAANSL 261
                      ********************************************************************************************** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      +++++++L++ pgEa+a n+vlqlhrll ++++++  +++vL++v s++Pk+++v+eqeadhn++ Fl+rf+eal yysa+fdsl+a  ++   
  OGLUM01G28380.1 262 DEVRPWMLQIAPGEAVAFNSVLQLHRLLGDPADQAP-INAVLDCVASVRPKIFTVIEQEADHNKTGFLDRFTEALFYYSAVFDSLDAA-SASGG 353
                      ****************************99988887.************************************************998.44558 PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      + + + +++l+rei+++v+ ega+rrerhe l++Wr+rl++aG+++vpl+++a  qa++l+  ++++g++vee +g+l+lgW++rpL+s+SaW+
  OGLUM01G28380.1 354 AGNAMAEAYLQREICDIVCGEGAARRERHEPLSRWRDRLTRAGLSAVPLGSNALRQARMLVGLFSGEGHSVEEADGCLTLGWHGRPLFSASAWE 447
                      888888889************************************************************************************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    
MDTFPFQWPM DPAASSGLDA GFLPPPAAVA PDDGVGYYDP PAGADVDAAA LPELAAAFPP  60
CAPDAAAAVL AMRREEEEVA GIRLVHLLMS CAGAIEAGDH ALASAQLADS HAALAAVSAA  120
SGIGRVAVHF TTALSRRLFP SPVAPPTTDA EHAFLYHHFY EACPYLKFAH FTANQAILEA  180
FHGCDHVHVI DFSLMQGLQW PALIQALALR PGGPPFLRIT GIGPPSPTGR DELRDVGLRL  240
ADLARSVRVR FSFRGVAANS LDEVRPWMLQ IAPGEAVAFN SVLQLHRLLG DPADQAPINA  300
VLDCVASVRP KIFTVIEQEA DHNKTGFLDR FTEALFYYSA VFDSLDAASA SGGAGNAMAE  360
AYLQREICDI VCGEGAARRE RHEPLSRWRD RLTRAGLSAV PLGSNALRQA RMLVGLFSGE  420
GHSVEEADGC LTLGWHGRPL FSASAWEAAG DGGGDNNNNS NSNVSGSSGS DSNNSGSSNG  480
KSSGARDGSS VCL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-115GRAS family protein