PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G27100.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 350aa    MW: 36829.5 Da    PI: 6.4065
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G27100.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY856.9e-27179237259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p ++++tY  eH h+
  OGLUM01G27100.1 179 SDLWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKMVERSPAKPGMLVVTYMAEHCHP 237
                      799***********************9988***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    
MRGPLLLRAV VVVAMEHFND WDLQAVVRSC SFPQSEPPRV GVGVPAAPGA GGAPVVVAPP  60
ARAPDGPDQM ARASASASAL YDLEYLDLDH KPFLLPGSSS SSSSSRAVAR ARGEDDGKGR  120
HEVMISFPAA AAASTSGAQP RSPSGRKPGI RTPRPKRSKK SQLKKVVYEV PVADGGVSSD  180
LWAWRKYGQK PIKGSPYPRG YYKCSSMKGC MARKMVERSP AKPGMLVVTY MAEHCHPVPT  240
QLNALAGTTR HKSAPTGDDD KPTSPGPAAG RAAAGEGVVK CEDVDGNELS AMAADGGAED  300
TAAAADDDGE LWPEGMGLEL DEFLGPMDDD VFEFDHVLED NGVLGRRLSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.19e-40WRKY family protein