PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G22860.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 443aa    MW: 47947.4 Da    PI: 6.4628
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G22860.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK86.81.9e-27286335352
           RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ++i +edl++yF++pi++AA+e++v+lTvLK++CR++GI+RWPhRk+ksl
  OGLUM01G22860.1 286 DHIGFEDLRRYFYMPITKAAREMNVGLTVLKKRCRELGIARWPHRKMKSL 335
                      6899********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    
MEMHECCYYG GSIGGDGLNP LAAIPPPCSS SSSSWSSQLL LLSDHDDVLL HSAGDHGGAV  60
AGIGGACMTA DLVVRDEEME MAAGYLPVAA SAAAAADFDH YMYQQFQLEP DQFVSTLPAV  120
AVAVAATAGG GSHDDELLRM PFTDIDLDAF ADARDVVVGV GEPKPSPQHT LDAAIALPAV  180
GGGGAHHFGT QDDDVKFDVT KQRNDAALAG DDSLSMVIVE SYEMGMRRHA AEQEQEQKPK  240
IITPAATTLT PPPLPLPPPP PPPPRVTRSR RDGSSAATAG GKTRLDHIGF EDLRRYFYMP  300
ITKAAREMNV GLTVLKKRCR ELGIARWPHR KMKSLKSLIL NEMGSKGMSA AAMRRELEAL  360
ENCCALMERN PAVELTERTK KLRQACFKEN YKRRRAAAVD VLDLDHCFSF AAGHCHRHHH  420
QQLALPPPPA AAADHRRRDF FGY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.13e-31Nin-like family protein