PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G15990.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 407aa    MW: 42611.2 Da    PI: 4.412
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G15990.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.25.1e-141350542
                     SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                        +r  t++kR++ + KKAeELS+LC+++va++ +++
  OGLUM01G15990.1 13 HRQKRAATYAKRKESLRKKAEELSTLCGVRVALVCAGP 50
                     567899****************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    
MARRKIPIGL IAHRQKRAAT YAKRKESLRK KAEELSTLCG VRVALVCAGP VVPGGGGGAA  60
GKEEVWESEE GVLAEYRALP PEARAQHAHR VYLEEEVGKE RAKLARVRQD GAFPSWDAAL  120
DGITADEARA LLESIDAARA AANARREALG LPDDGNGVDD DGGLVLQQQQ EHVPPGGSDA  180
VVVPVGHGVL QYTGSGGGNQ MQTTPAADGI NCADLYGAVP WDDTFQPQVM RIGDHFVPMD  240
GYLWQAPGNG WPDLATGCTN ESCSCNAAAA AAAMPAMYPP TLDTVHGSFL AAPAQPIPIA  300
FSTGTDFIDA PNDFLTMGLC GGFTNVGDYS AAQPQSSADG GFQLGDTFAA EPGDTQSQNW  360
GSFINVVSDD SAQCNCNAAI HLDQMNYLFG GTGGGEPSDT QSRHWGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31630.17e-11M-type_MADS family protein