PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT1G31630.1

Common Name

AGL86, F27M3.17

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 339aa MW: 36941.7 Da PI: 6.6479

Description

AGAMOUS-like 86

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT1G31630.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	39.4	7.8e-13	10	51	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i nk+ r +tf kR+ gi K +EL +LC+++++ +i s+ AT1G31630.1 10 IANKTSRRTTFRKRKGGITNKLHELTTLCGVKACAVISSPYE 51 89***********************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	15.404	1	48	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.68E-29	1	83	No hit	No description
SMART	SM00432	2.0E-14	1	59	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.92E-22	2	93	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-7	2	22	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.8E-14	10	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-7	22	37	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009001	anatomy	fruit
PO:0009062	anatomy	gynoecium
PO:0009089	anatomy	endosperm
PO:0020093	anatomy	antipodal cell
PO:0025034	anatomy	leaf

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MRSKIKLSLI ANKTSRRTTF RKRKGGITNK LHELTTLCGV KACAVISSPY ENPVVWPSTE 60 GVQEAVSMFM ERPATEQSKL MMSHETYLQD KITKETKKLE SLRRENRESQ LRQFMFDCVE 120 GKMSEHQYGA RDLQDLSLYI DHYINQLNSS VMLLTNNGAS SSSFPPPLHT SVAGAGAGAG 180 AAPLVVAGAG AAPLAVAGAG ASPLAVAGVG AAPLAVAGAG PPMAQNQYEP IQPYIPTAFS 240 DNIQYQAPVD FNHQIQHGIY DNLSLDPNHQ YPFQDDPFME MLMEYPYEQV GYAAEHAHIP 300 FMNGNYYNYH QPPTVGLTTT GHMPSNNATT TTTTNTTVV

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	18398040	0.0
Genevisible	246578_at	0.0
Expression Atlas	AT1G31630	-
AtGenExpress	AT1G31630	-
ATTED-II	AT1G31630	-

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT1G31630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Interaction ? help Back to Top
Source	Intact With
BioGRID	AT1G65360, AT1G69120
IntAct	Search Q9C6V3

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT1G31630

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC074360	0.0	AC074360.5 Arabidopsis thaliana chromosome 1 BAC F27M3 genomic sequence, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	DQ056473	0.0	DQ056473.1 Arabidopsis thaliana MADS-box family protein (At1g31630) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_174444.1	0.0	AGAMOUS-like 86
Swissprot	Q9C6V3	0.0	AGL86_ARATH; Agamous-like MADS-box protein AGL86
TrEMBL	A0A178W8T2	0.0	A0A178W8T2_ARATH; AGL86
STRING	AT1G31630.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415
Representative plant	OGRP114	13	173

Link Out ? help Back to Top
Phytozome	AT1G31630.1
Entrez Gene	840050
iHOP	AT1G31630
wikigenes	AT1G31630

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] De Bodt S, et al. Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants. J. Mol. Evol., 2003. 56(5): p. 573-86 [PMID:12698294] Parenicová L, et al. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell, 2003. 15(7): p. 1538-51 [PMID:12837945] Kofuji R, et al. Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses. Mol. Biol. Evol., 2003. 20(12): p. 1963-77 [PMID:12949148] de Folter S, et al. Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. Plant Cell, 2005. 17(5): p. 1424-33 [PMID:15805477] Bemer M,Wolters-Arts M,Grossniklaus U,Angenent GC The MADS domain protein DIANA acts together with AGAMOUS-LIKE80 to specify the central cell in Arabidopsis ovules. Plant Cell, 2008. 20(8): p. 2088-101 [PMID:18713950] Day RC,Herridge RP,Ambrose BA,Macknight RC Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signaling, and gene expression regulation. Plant Physiol., 2008. 148(4): p. 1964-84 [PMID:18923020] Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis. Plant Physiol., 2010. 154(1): p. 287-300 [PMID:20631316] Mar Large-scale identification of gibberellin-related transcription factors defines group VII ETHYLENE RESPONSE FACTORS as functional DELLA partners. Plant Physiol., 2014. 166(2): p. 1022-32 [PMID:25118255] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]