PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G11550.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 489aa MW: 54707.9 Da PI: 5.0112

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G11550.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.3	4.5e-51	9	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGf FhP+d el+++yLkkk++g+k+e e+i+evdiyk+ePwdLp+ v +++++w+fF+ rd+ky++g+r+nrat +gyWk+tgkd+++ OGLUM01G11550.1 9 LPPGFGFHPKDTELISHYLKKKIHGQKIEY-EIIPEVDIYKHEPWDLPAkcDVPTQDNKWHFFAARDRKYPNGSRSNRATVAGYWKSTGKDRAI 101 79**************************.99***********5356667999********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++++g+kktLvf++gr p+g++t+W+mhey + OGLUM01G11550.1 102 KM-GKQTIGTKKTLVFHEGRPPTGRRTEWIMHEYYI 136 9.99****************************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MESLRDMVLP PGFGFHPKDT ELISHYLKKK IHGQKIEYEI IPEVDIYKHE PWDLPAKCDV 60 PTQDNKWHFF AARDRKYPNG SRSNRATVAG YWKSTGKDRA IKMGKQTIGT KKTLVFHEGR 120 PPTGRRTEWI MHEYYIDERE CQACPDMKDA YVLCRITKRN DWIPGNGNEL DNSDPHPEPY 180 DAPPSVISTE QLNPAAEPVV GVEAAPVTVA EPDGVTTSAI TANIPSPSDD INLDDWLNEL 240 FDPFFDPEQS LASADLSPDE QNVESSNLGA LAPKVEQDYS SPNENVVDDT EYLLPEDVYN 300 ILHPGTDDFN MLQNPLDQYP IQYATDVWSG IQKEELWSPQ ANAEPSQSNE AADNGIIRRY 360 RSMKTPETSV PQFKGKTQAK MRVGINKMAT SSSESINQTI KFENSGRLVE HQKNQAHDVA 420 STKRSDAGKP STELSSNRGF LRGIRNAFAG CSDARWNMIL VAGFAIGVAV VALHIGQRLG 480 LSQRDQQHT

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MESLRDMVLP PGFGFHPKDT ELISHYLKKK IHGQKIEYEI IPEVDIYKHE PWDLPAKCDV  60
PTQDNKWHFF AARDRKYPNG SRSNRATVAG YWKSTGKDRA IKMGKQTIGT KKTLVFHEGR  120
PPTGRRTEWI MHEYYIDERE CQACPDMKDA YVLCRITKRN DWIPGNGNEL DNSDPHPEPY  180
DAPPSVISTE QLNPAAEPVV GVEAAPVTVA EPDGVTTSAI TANIPSPSDD INLDDWLNEL  240
FDPFFDPEQS LASADLSPDE QNVESSNLGA LAPKVEQDYS SPNENVVDDT EYLLPEDVYN  300
ILHPGTDDFN MLQNPLDQYP IQYATDVWSG IQKEELWSPQ ANAEPSQSNE AADNGIIRRY  360
RSMKTPETSV PQFKGKTQAK MRVGINKMAT SSSESINQTI KFENSGRLVE HQKNQAHDVA  420
STKRSDAGKP STELSSNRGF LRGIRNAFAG CSDARWNMIL VAGFAIGVAV VALHIGQRLG  480
LSQRDQQHT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	3e-66	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G11550.1