PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G17260.1 | ||||||||
Common Name | anac086, MKP11.11, NAC086 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 476aa MW: 54828.9 Da PI: 5.2261 | ||||||||
Description | NAC domain containing protein 86 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176.8 | 6.2e-55 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeel+++yLk+k++g+++el e+i+evd+yk+ePwdLp k + ++++ew+fFs+rd+ky++g+r+nratk gyWkatgkd++v + AT5G17260.1 6 LPPGFRFHPTDEELITYYLKRKINGQEIEL-EIIPEVDLYKCEPWDLPgKsLIPSKDQEWFFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVSW-R 101 79****************************.99***************6346677999*************************************9.8 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++++g+kktLv+y+grap+g +t Wvmheyrl AT5G17260.1 102 DRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133 899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-63 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.881 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0090602 | Biological Process | sieve element enucleation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELI TYYLKRKING QEIELEIIPE VDLYKCEPWD LPGKSLIPSK 60 DQEWFFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLDESECEP SAFGMQDAYA LCRVFKKIVI EAKPRDQHQQ QHQPYVHTSS 180 NISGSSSFDV CSDLEISSNT PYNTAAHIQP RFGNANAISD HDDWSQYLSQ NMPTSFSDYG 240 SPYGPYLTQS KVNTEVQCEM FQHQMSLPPL RVENSQAQTS DFSKRLHQNS GQSGFDDFTF 300 AASNSNQFYN SNVDDHLIHI GNLDEQSYIE EQELILPSFQ SNDQDLELYG GSRTNTIDNI 360 EIDDFFSFEN QAQDNDNSNV TPNSAGFEMI GEEIIVNHKM LISTRQTTEI LYYQVVPSQI 420 LKIHINPVHG NEERTMLMEE DSDDSWFQKA ENVAKMKLKQ ISLVAKRYYK CLTIIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-54 | 2 | 157 | 11 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.50709 | 0.0 | floral meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18418236 | 0.0 | ||||
Genevisible | 250086_at | 0.0 | ||||
Expression Atlas | AT5G17260 | - | ||||
AtGenExpress | AT5G17260 | - | ||||
ATTED-II | AT5G17260 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269|PubMed:25081480}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G17260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Disruption Phenotype ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with NAC045 (AC A4VCM0). Nac045 and nac086 double mutants exhibit seedling lethality with defective development of the protophloem sieve element. {ECO:0000269|PubMed:25081480}. |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G17260 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB005238 | 0.0 | AB005238.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKP11. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_197228.1 | 0.0 | NAC domain containing protein 86 | ||||
Swissprot | Q9FFI5 | 0.0 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | A0A178UC52 | 0.0 | A0A178UC52_ARATH; NAC086 | ||||
STRING | AT5G17260.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4411 | 18 | 52 | Representative plant | OGRP17 | 15 | 800 |
Link Out ? help Back to Top | |
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Phytozome | AT5G17260.1 |
Entrez Gene | 831591 |
iHOP | AT5G17260 |
wikigenes | AT5G17260 |
Publications ? help Back to Top | |||
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