PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G10590.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 311aa    MW: 32906 Da    PI: 8.4577
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G10590.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK72.26.7e-234591450
           RWP-RK  4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50
                     ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ 
  OGLUM01G10590.1 45 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLV 91
                     6899*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MASTAQPQQQ PQQQQEQQPV AAAAAVPTPA PPASEAQPQK PTRVSLSYEE ISKLFSLPIA  60
EAASILGVCT SVLKRICRSH GIVRWPYRKL VSGKSGDDTK NAEREKAKGL LEISKVAKQK  120
ALSASGLSTV SPGAFQGVAK SQQGSSKAGQ VSPPGKQNVL GGSAILSYGT QTKGIPTYMD  180
DFKYGFPSSG LSLQTMKWWG TDSHTETTPA KDDNGEAPES ANEASKGMTD DELDWGADEA  240
EAEADADSAI TTEPSAQLCS LRRKAVDDGR KLLTGKSCGG LELCRLNKRQ KMALAQVFGA  300
SLPEQLRSKL G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74480.13e-10Nin-like family protein