PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT1G74480.1

Common Name

AtRKD2, F1M20.16, RKD2, URP4

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 298aa MW: 33888 Da PI: 6.6378

Description

RWP-RK domain-containing protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT1G74480.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	76.8	2.4e-24	134	182	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++s e++s+yF++pi++AA L+v+lT+LKr+CR++GI+RWPhRk+ sl AT1G74480.1 134 TLSKETVSRYFYMPITQAAIALNVGLTLLKRRCRELGIRRWPHRKLMSL 182 7999******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.029	121	203	IPR003035	RWP-RK domain
Pfam	PF02042	2.0E-20	134	182	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0020094	anatomy	plant egg cell

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MADHTTKEQK SFSFLAHSPS FDHSSLSYPL FDWEEDLLAL QENSGSQAFP FTTTSLPLPD 60 LEPLSEDVLN SYSSASWNET EQNRGDGASS EKKRENGTVK ETTKKRKINE RHREHSVRII 120 SDITTYTTSS APTTLSKETV SRYFYMPITQ AAIALNVGLT LLKRRCRELG IRRWPHRKLM 180 SLNTLISNVK ELQKMEGEEN AEKLQDALEM LEKEKRTIED LPDLEFKDKT KRLRQACFKA 240 NHKRKKKRSL KSDQSQVPSC SSSGSVPSDE SVDEAGMESD EEMKYLLCGF SSEFTSGL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	106	KKRENGTVKETTKKRK

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	18410623	0.0
Genevisible	260212_at	0.0
Expression Atlas	AT1G74480	-
AtGenExpress	AT1G74480	-
ATTED-II	AT1G74480	-

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00234	DAP	27203113	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT1G74480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT1G74480

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ056518	0.0	DQ056518.1 Arabidopsis thaliana RWP-RK domain-containing protein (At1g74480) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_177588.1	0.0	RWP-RK domain-containing protein
Swissprot	Q9CA66	0.0	RKD2_ARATH; Protein RKD2
TrEMBL	A0A178W9H3	0.0	A0A178W9H3_ARATH; URP4
STRING	AT1G74480.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56
Representative plant	OGRP567	17	77

Link Out ? help Back to Top
Phytozome	AT1G74480.1
Entrez Gene	843789
iHOP	AT1G74480
wikigenes	AT1G74480

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Schauser L,Wieloch W,Stougaard J Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus japonicus. J. Mol. Evol., 2005. 60(2): p. 229-37 [PMID:15785851] Yu HJ,Hogan P,Sundaresan V Analysis of the female gametophyte transcriptome of Arabidopsis by comparative expression profiling. Plant Physiol., 2005. 139(4): p. 1853-69 [PMID:16299181] Wuest SE, et al. Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes. Curr. Biol., 2010. 20(6): p. 506-12 [PMID:20226671] Koszegi D, et al. Members of the RKD transcription factor family induce an egg cell-like gene expression program. Plant J., 2011. 67(2): p. 280-91 [PMID:21457369] Waki T, et al. A GAL4-based targeted activation tagging system in Arabidopsis thaliana. Plant J., 2013. 73(3): p. 357-67 [PMID:23057675] Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]