PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G10550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 219aa MW: 23615.7 Da PI: 10.7326 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 64.6 | 3.7e-20 | 1 | 76 | 24 | 89 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...........k 89 ++a+c a +F+L++ LG+++d++t++WLlqqa+ ai + tgt++++ + + +++ + +++++ + OGLUM01G10550.1 1 MPALCVAWIFQLTRDLGHKSDGETVQWLLQQAELAIVATTGTGTIPVGGA-DRQQEDALPAEQIDavagepspcgrR 76 9*****************************************77777333.11111111112222333333334441 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MPALCVAWIF QLTRDLGHKS DGETVQWLLQ QAELAIVATT GTGTIPVGGA DRQQEDALPA 60 EQIDAVAGEP SPCGRRGRRS SPLRRVPASS GGPHTSHASG PSPGRALFGE REGGGERRVV 120 EERKNRNATY ILKMAQPSGI IVFLRSSPSP RRMQPAARHT FCSLFLQFSG NCGWVANPIS 180 NSAFPRAHRH THPATAAAAT TTTTRPPWTK EMRRESCCG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 1e-20 | TCP family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM01G10550.1 |