PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G10130.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 537aa MW: 56170.8 Da PI: 6.7092

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G10130.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.6	1.2e-27	213	267	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G++kA+P++ilelm++++Lt+++++SHLQkYR++ OGLUM01G10130.1 213 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGIECLTRHNIASHLQKYRSH 267 5689***************.******************************86 PP
2	Myb_DNA-binding	39.7	1.1e-12	216	265	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e++ ++v+av+qlG + +++I + mg + +t+ ++ s++qky+ OGLUM01G10130.1 216 VDWTPELHRRFVQAVEQLGIDkaVPSRILELMGiECLTRHNIASHLQKYR 265 57******************************999**********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence
MLEVSTLRSP KADQRAGVGG HHVVGFVPAP PSPADVADEV DAFIVDDSCL LEYIDFSCCD 60 VPFFHADDGD ILPDLEVDPT ELLAEFASSP DDKPPPTTSA PGPGEPAAAA GAKEDVKEDG 120 AAAAAAAADY DGSPPPPRGK KKKDDEERSS SLPEEKDAKN GGGDEVLSAV TTEDSSAGAA 180 KSCSPSAEGH SKRKPSSSSS SAAAGKNSHG KRKVKVDWTP ELHRRFVQAV EQLGIDKAVP 240 SRILELMGIE CLTRHNIASH LQKYRSHRKH LMAREAEAAS WTQKRQMYTA AAAAATVAAG 300 GGPRKDAAAA TAAVAPWVMP TIGFPPPHAA AMVPPPPHPP PFCRPPLHVW GHPTAGVEPT 360 TAAAPPPPSP HAQPPLLPVW PRHLAPPPPP LPAAWAHGHQ PAPVDPAAYW QQQYNAARKW 420 GPQAVTPGTP CMPPPLPPAA MLQRFPVPPV PGMVPHPMYR PIPPPSPPQG NKLAALQLQL 480 DAHPSKESID AAIGDVLVKP WLPLPLGLKP PSLDSVMSEL HKQGIPKVPP AASGAAG

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence

MLEVSTLRSP KADQRAGVGG HHVVGFVPAP PSPADVADEV DAFIVDDSCL LEYIDFSCCD  60
VPFFHADDGD ILPDLEVDPT ELLAEFASSP DDKPPPTTSA PGPGEPAAAA GAKEDVKEDG  120
AAAAAAAADY DGSPPPPRGK KKKDDEERSS SLPEEKDAKN GGGDEVLSAV TTEDSSAGAA  180
KSCSPSAEGH SKRKPSSSSS SAAAGKNSHG KRKVKVDWTP ELHRRFVQAV EQLGIDKAVP  240
SRILELMGIE CLTRHNIASH LQKYRSHRKH LMAREAEAAS WTQKRQMYTA AAAAATVAAG  300
GGPRKDAAAA TAAVAPWVMP TIGFPPPHAA AMVPPPPHPP PFCRPPLHVW GHPTAGVEPT  360
TAAAPPPPSP HAQPPLLPVW PRHLAPPPPP LPAAWAHGHQ PAPVDPAAYW QQQYNAARKW  420
GPQAVTPGTP CMPPPLPPAA MLQRFPVPPV PGMVPHPMYR PIPPPSPPQG NKLAALQLQL  480
DAHPSKESID AAIGDVLVKP WLPLPLGLKP PSLDSVMSEL HKQGIPKVPP AASGAAG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	144	RGKKKKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	2e-44	G2-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G10130.1