PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu064794.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 490aa MW: 54034.2 Da PI: 5.4085

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu064794.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.1	2.3e-06	266	285	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 C f+++ G+C G++C+F H Oeu064794.1 266 VCEFHSK-GWCIKGNTCRFLH 285 6****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MNSSSSVNDP MPATTHPLTT EIDDDVEMEY EEVEEVGKEV EIEEGKDDDF GEDLTPIREE 60 NNQNDPSGDT GLEEHMRSGL MTSGKDVAEP QPNIPTILGN TCKLNISESS EDRPKVESRG 120 DDPNRVTGPE EHLKSSLVTS RKHAHPLPNI PNILGNTGRP KIFESSEDRP NTESCGDGKR 180 TLKDTDEKPF SDSRGMNSLN SKASAGSVSA TTSMIDASRE KFYGAEYFAA VNTKQMSQRL 240 NTSQTRPRDL SSSTELTGGI KRQRIVCEFH SKGWCIKGNT CRFLHIKEGA VDASTGHITR 300 TSFDDWEPSV PFRPSHFITE KLLSQANLCD PIRDSIEPTK VRDGVSKISG GGDLHSTGDV 360 DPKAIILSTS RDSGKLGESI HVTEPDLDKV SLKNEHSGYL QKESKEMKHF RAVLVEHVKD 420 LVKPTWLEGL LSKDAHKLVV KKAVDKILSS FQPPHQIPST GESIKSYLYV SQPKIEKLVE 480 GYMEKYGKS*

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MNSSSSVNDP MPATTHPLTT EIDDDVEMEY EEVEEVGKEV EIEEGKDDDF GEDLTPIREE  60
NNQNDPSGDT GLEEHMRSGL MTSGKDVAEP QPNIPTILGN TCKLNISESS EDRPKVESRG  120
DDPNRVTGPE EHLKSSLVTS RKHAHPLPNI PNILGNTGRP KIFESSEDRP NTESCGDGKR  180
TLKDTDEKPF SDSRGMNSLN SKASAGSVSA TTSMIDASRE KFYGAEYFAA VNTKQMSQRL  240
NTSQTRPRDL SSSTELTGGI KRQRIVCEFH SKGWCIKGNT CRFLHIKEGA VDASTGHITR  300
TSFDDWEPSV PFRPSHFITE KLLSQANLCD PIRDSIEPTK VRDGVSKISG GGDLHSTGDV  360
DPKAIILSTS RDSGKLGESI HVTEPDLDKV SLKNEHSGYL QKESKEMKHF RAVLVEHVKD  420
LVKPTWLEGL LSKDAHKLVV KKAVDKILSS FQPPHQIPST GESIKSYLYV SQPKIEKLVE  480
GYMEKYGKS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-21	C3H family protein