PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu054657.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 429aa MW: 47978 Da PI: 6.1941

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu054657.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.3	2.6e-08	77	97	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C +f rtG Ck+G C+++H+ Oeu054657.1 77 CLHFIRTGSCKFGLDCRYNHP 97 99******************9 PP
2	zf-CCCH	36.6	7.4e-12	183	207	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+f++r+GtC yG+rC F+H+ Oeu054657.1 183 GEKECPFYMRNGTCGYGSRCVFNHP 207 5789********************9 PP
3	zf-CCCH	31.6	2.8e-10	330	356	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++tG Ck+ + C+++H++ Oeu054657.1 330 PGRPDCDYFMKTGNCKFRSACRYHHPK 356 689**********************96 PP
4	zf-CCCH	33.1	9.7e-11	376	401	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++Cr++ r G Ck+G+ C F H+ Oeu054657.1 376 PGRSICRHYERHGDCKFGSACLFDHP 401 6899*********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MGTFGDDGIL PNTKSESEEP EQGFSSTDSH IEDALLEKLE NVVLKADEYD TENDGQKDSG 60 CLDGSGLLPL RPYAGDCLHF IRTGSCKFGL DCRYNHPDIR TQTQTQAAID LDKDVVPEDS 120 GPIECKKAQL SLCQLKVTLL LFQYYRTAEG CKYGKSCRYW HHGEESQNIV PELNFLGLPI 180 RSGEKECPFY MRNGTCGYGS RCVFNHPDPT PITGMGSPNS SVDDKYERQL SHPLEKHNGL 240 PIHFSGASQP DQTSRFLYSF SDNTISYPNS HSSYVTPHTP PQQMQKQSEW NGYQAPNSHQ 300 SGNYSATPSA DGSLRKSYIS MQDEEFPERP GRPDCDYFMK TGNCKFRSAC RYHHPKDRKP 360 KPDERVLSEK GLPLRPGRSI CRHYERHGDC KFGSACLFDH PISHGLSAYT DWHVSKTSAD 420 SDAGSWGD*

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MGTFGDDGIL PNTKSESEEP EQGFSSTDSH IEDALLEKLE NVVLKADEYD TENDGQKDSG  60
CLDGSGLLPL RPYAGDCLHF IRTGSCKFGL DCRYNHPDIR TQTQTQAAID LDKDVVPEDS  120
GPIECKKAQL SLCQLKVTLL LFQYYRTAEG CKYGKSCRYW HHGEESQNIV PELNFLGLPI  180
RSGEKECPFY MRNGTCGYGS RCVFNHPDPT PITGMGSPNS SVDDKYERQL SHPLEKHNGL  240
PIHFSGASQP DQTSRFLYSF SDNTISYPNS HSSYVTPHTP PQQMQKQSEW NGYQAPNSHQ  300
SGNYSATPSA DGSLRKSYIS MQDEEFPERP GRPDCDYFMK TGNCKFRSAC RYHHPKDRKP  360
KPDERVLSEK GLPLRPGRSI CRHYERHGDC KFGSACLFDH PISHGLSAYT DWHVSKTSAD  420
SDAGSWGD*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	7e-79	C3H family protein