PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu053598.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 254aa MW: 28846.1 Da PI: 6.173 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.5 | 7.5e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n+s rqvtfskRr+g+lKKA+EL vLCda+va+iifsstgkl+e++s Oeu053598.1 9 KKIDNTSARQVTFSKRRKGLLKKAKELTVLCDADVALIIFSSTGKLFEFAS 59 68***********************************************86 PP | |||||||
2 | K-box | 45 | 4.6e-16 | 94 | 171 | 21 | 98 |
K-box 21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++L e+ + +++R + Ge+L++Ls +eLq+Le+ Le++l+++ +kK+e ++++i++lq+k el een++Lr ++ Oeu053598.1 94 YSRLSGEVAERSHQLRYMRGEELQELSTEELQKLERSLETGLSRVIEKKDEKFMKEINQLQQKRMELMEENERLRLQI 171 667777777778899************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence |
MTREKIQIKK IDNTSARQVT FSKRRKGLLK KAKELTVLCD ADVALIIFSS TGKLFEFASS 60 SMKDILEKHG LHTKNLEKLE QSSLELQIVG DINYSRLSGE VAERSHQLRY MRGEELQELS 120 TEELQKLERS LETGLSRVIE KKDEKFMKEI NQLQQKRMEL MEENERLRLQ ISRGKKNMIA 180 ADSVNIVEEE GQSSESITNA CNSIGPPQDS DSSDTSLKLG LISFLAGCHT LAETMELNLI 240 VDGWMITCRI WMF* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 2e-71 | MIKC_MADS family protein |