PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oeu041404.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 139aa MW: 16177.1 Da PI: 10.4805 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.5 | 1.7e-18 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+ r+ tf kR++g++KK +ELS+LC+++++ ii+s+ Oeu041404.1 10 FITNDLARKATFKKRKKGLMKKVSELSTLCGIDICAIIYSP 50 899*************************************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 139 aa Download sequence |
MTRKKVKIAF ITNDLARKAT FKKRKKGLMK KVSELSTLCG IDICAIIYSP YESQPEVWPD 60 NRGIHRVLAQ FKRMLEMEQS KKMVNQESFI RQRIAKASEQ LKKQHKENRE KEITRIMYQC 120 LTGEGLQNLM MLDLNDLG* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 3 | 25 | RKKVKIAFITNDLARKATFKKRK |
2 | 22 | 26 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-52 | M-type_MADS family protein |