PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu013452.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

NF-YC

Protein Properties

Length: 272aa MW: 30246.1 Da PI: 4.5471

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu013452.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	41.3	3.3e-13	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++++v++ ++fdfl d+v r Oeu013452.1 1 MQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYEITLKRGAKTVNSLHLKQCVQSFNVFDFLKDTVSR 69 899***************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MQADEDVGKI AMAVPVLVSK ALELFLQDLC DRTYEITLKR GAKTVNSLHL KQCVQSFNVF 60 DFLKDTVSRV PDLGCSEASA DDRSATKKRR VSEDEDNGTD GESKRIHMPE TGHISTGGRV 120 RGRGRGRGRG RGRGRNKGSH TQERELNTQY EKFEDYPDVS PQNDEKQNEN FEKPDNFAGP 180 ADFSNMGGKE ADMSVRNFDL NVDLHENGNS TPVMAGGTSN LSTNAALEMK HEEIPGWSLN 240 DVEGMTIDPT QLANINRRMD VEEEEDYDEE E*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	129	RVRGRGRGRGR
2	121	130	RGRGRGRGRG
3	121	131	RVRGRGRGRGR
4	123	132	RGRGRGRGRG
5	123	133	RVRGRGRGRGR
6	125	134	RGRGRGRGRG
7	125	137	RGRGRGRGRGRNK
8	125	135	RVRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	4e-48	NF-YC family protein