PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu012145.5

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 547aa MW: 60666.4 Da PI: 6.3337

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu012145.5	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20	1.3e-06	150	169	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C f+a+ G+C G++C+F H Oeu012145.5 150 ICEFHAK-GWCIKGNSCRFLH 169 79999.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MEPEGHEEHL TSGSVTPGIP IANPQGILTI EESSGNFIIS ESSETRHKKE PCDNGERTSK 60 DSNQTALCGS EGINELNTKS SAGFIATLSV VDNSRKKVNI DNIEENVHTS VEAAENIKQM 120 SSRLDAPQIR PRHLSSTAEF SAEAKRPRII CEFHAKGWCI KGNSCRFLHI KEGDLETAKK 180 ESEFLAVEDF SSCYSISSDN YRSTGISSYG TSIEGTTDQK SQFLSRDHIS RGLSYSLSRP 240 PFSFSSSSWN TDALPTLKLL ESSRQHHVSL SSSFRRSSLS FSGSESKSLS QNNVFSDADH 300 SYGYKTNISS DDWEPSVPFR PSHSITQKLL FQENQYDPIR HSIEQTVVGD GLLKSPYSDQ 360 RASNKNTQLQ SNNSQEDENL LNSVHVKDIK KVSTSNSGSR LEGDGSRNKT EPKVEEVSQN 420 NEHDIDMKTN GHVQKVSKTL KSFQNALVEF VKELVKPTWR EGLLSRDAHK LIVKKAVDKV 480 LSTMQSDQIP STDENINLYL SVSQPKIAKL VEACLCLPTM PSSEGLAGTH EMLEICLRFR 540 VLWIEL*

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MEPEGHEEHL TSGSVTPGIP IANPQGILTI EESSGNFIIS ESSETRHKKE PCDNGERTSK  60
DSNQTALCGS EGINELNTKS SAGFIATLSV VDNSRKKVNI DNIEENVHTS VEAAENIKQM  120
SSRLDAPQIR PRHLSSTAEF SAEAKRPRII CEFHAKGWCI KGNSCRFLHI KEGDLETAKK  180
ESEFLAVEDF SSCYSISSDN YRSTGISSYG TSIEGTTDQK SQFLSRDHIS RGLSYSLSRP  240
PFSFSSSSWN TDALPTLKLL ESSRQHHVSL SSSFRRSSLS FSGSESKSLS QNNVFSDADH  300
SYGYKTNISS DDWEPSVPFR PSHSITQKLL FQENQYDPIR HSIEQTVVGD GLLKSPYSDQ  360
RASNKNTQLQ SNNSQEDENL LNSVHVKDIK KVSTSNSGSR LEGDGSRNKT EPKVEEVSQN  420
NEHDIDMKTN GHVQKVSKTL KSFQNALVEF VKELVKPTWR EGLLSRDAHK LIVKKAVDKV  480
LSTMQSDQIP STDENINLYL SVSQPKIAKL VEACLCLPTM PSSEGLAGTH EMLEICLRFR  540
VLWIEL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-20	C3H family protein