PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu009122.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

LBD

Protein Properties

Length: 312aa MW: 34757.8 Da PI: 6.4525

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu009122.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.5	1.2e-39	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+ +Cv+apyf ++p+kfanvh++FGas+v kll++l+ ++reda++sl+yeAe r+ dPvyG+vg+i++lq++l+q++++la+ k Oeu009122.1 7 PCAACKFLRRKCTLECVFAPYFSPDNPQKFANVHEVFGASKVAKLLNELNASQREDAVNSLAYEAEYRLCDPVYGCVGLISTLQHKLRQVHNDLATSK 104 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Oeu009122.1 105 KE 106 87 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MSSTTSPCAA CKFLRRKCTL ECVFAPYFSP DNPQKFANVH EVFGASKVAK LLNELNASQR 60 EDAVNSLAYE AEYRLCDPVY GCVGLISTLQ HKLRQVHNDL ATSKKELATY IGPAAMLPML 120 NLQQQYPNYG ASAFQAMPYN MQPMMAMPTG VSHSAQLMIR DPHQQQQILN AQQMAAVTYE 180 PHQHQQQDDL VRYNGGFDNA GGPVIATGFA QISDENAMPP PSSSALGSYE NNPLHHIQQE 240 AQDHSHSHQL QLEPQPHEFF LQQQPQENAS PHHHLQQLIQ LQPEEPQASH SQPRQQQRAR 300 SEEGRSVNPS C*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-72	LBD family protein