PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu008135.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 690aa MW: 75273.4 Da PI: 6.4604

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu008135.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.6	7.6e-07	274	294	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Oeu008135.1 274 PCPDFRK-GACHRGDMCEYAHG 294 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence
MNDNFLNVET EDAFASLLEF AANNDIEGFK KSVDSEPSGI NAVGLWYGRQ KGSKQMVFHQ 60 RTPLMVAATY GSLDVLKLII SSPDVDVNRS SGVDKSTALH CAASSGSVKT IDVVKLLLAA 120 GADPNLEDAN GCCPVDVIIV PPKFQEMKIS LVTILKNDSS YGDLNLRVST TISNSVSSTV 180 SPPPCIESPS SPSELVASPK SAKFASDKKE YFIDPSLPDI KNSIYSTDEF RMFSFKVRPC 240 SRAYSHDWTE CPFVHPGENA RRRDPRKYHY SCVPCPDFRK GACHRGDMCE YAHGVFECWL 300 HPAQYRTRLC KDGTSCNRRV CFFAHTQEEL RPLYVSTGSA ILSPHSSSSA ANAMDFAAAM 360 SLLPASPSSS FTPPMSPSIN GMSNMGWPPQ NVPALHLPGS NLQSSRLRTS LNARDIPPED 420 LSLLEDFDFQ EKQFLNELSR LSQPSINTNS LNHSARSKTL ISSNLEDAFS VESSSPRYTE 480 TSVFSPTRKS ALLNQFQPQQ QNVLSPVDTP YSPRNVDHAL LQASFGIPSS GRMSPCNMEH 540 MSSINSRVSM LAQSLKHQKQ FRSLSSRDLG SKAMAAVASS KDAGSSWGSS TGKPDWAVNA 600 DEFGKLKRSS SLENLNGAEE PDLSWVQSLV KESPQETKEK STPHMFSTAG SVTSTGENQN 660 LDSQAEHIDQ STALGALLEQ MKLDQLMAQ*

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence

MNDNFLNVET EDAFASLLEF AANNDIEGFK KSVDSEPSGI NAVGLWYGRQ KGSKQMVFHQ  60
RTPLMVAATY GSLDVLKLII SSPDVDVNRS SGVDKSTALH CAASSGSVKT IDVVKLLLAA  120
GADPNLEDAN GCCPVDVIIV PPKFQEMKIS LVTILKNDSS YGDLNLRVST TISNSVSSTV  180
SPPPCIESPS SPSELVASPK SAKFASDKKE YFIDPSLPDI KNSIYSTDEF RMFSFKVRPC  240
SRAYSHDWTE CPFVHPGENA RRRDPRKYHY SCVPCPDFRK GACHRGDMCE YAHGVFECWL  300
HPAQYRTRLC KDGTSCNRRV CFFAHTQEEL RPLYVSTGSA ILSPHSSSSA ANAMDFAAAM  360
SLLPASPSSS FTPPMSPSIN GMSNMGWPPQ NVPALHLPGS NLQSSRLRTS LNARDIPPED  420
LSLLEDFDFQ EKQFLNELSR LSQPSINTNS LNHSARSKTL ISSNLEDAFS VESSSPRYTE  480
TSVFSPTRKS ALLNQFQPQQ QNVLSPVDTP YSPRNVDHAL LQASFGIPSS GRMSPCNMEH  540
MSSINSRVSM LAQSLKHQKQ FRSLSSRDLG SKAMAAVASS KDAGSSWGSS TGKPDWAVNA  600
DEFGKLKRSS SLENLNGAEE PDLSWVQSLV KESPQETKEK STPHMFSTAG SVTSTGENQN  660
LDSQAEHIDQ STALGALLEQ MKLDQLMAQ*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein