PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu007015.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 831aa MW: 91381.2 Da PI: 6.0305

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu007015.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.2e-06	206	226	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr+f++ G C+ Gd+C+F+H Oeu007015.1 206 PCRDFMK-GKCRWGDTCRFSHH 226 7****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 831 aa Download sequence
MEDESKHLSG MSEFNSSTGK ENHSSFHSGR RNEISASGIS SAPESRDHSG WPNRESLEGN 60 TVAPLVDSFY KNRQDNAEAK EIGRGKSYNK NLSPGFDGAD WHKRDQTPEY DWSGSGRFVR 120 LYSELGFGTQ EKAGAGAGAE GEAGVRAGTR QGTEEGAGAG AGAGAEARAV SYSNDRGPGF 180 QSRNDVCDPY YEEDEQFRNQ SRNAFPCRDF MKGKCRWGDT CRFSHHEASG DSYGKGTRDA 240 SFSRHIEQQA NKNVKPSCKF FAAGNCNRDD CRFSHDGPKL NNLEGRPGED TSIFSLDDKS 300 KWWNGTSWDD SVKVSDKVKS TGGTGSVVAN VNVIGETALG RTDGRLDHSL EIERRTWGIP 360 KQNENYLKRD QQLSLLGESG SYDVDMGMTE SMVKESIAGK QECIFHDSQL LNEDGISHVY 420 GQNTMQEDHS LSIKTSQQNV ITDSHIQQHH QGPVEDNDVN LFGSDALDEV NGSGNAIHPV 480 LFPGRIFNQN GESLFPGDSS FSTETDRNQH VLIDLNRTQQ HKMSPSRLQS QMQNLHNAIK 540 TQVMSEFQAS QFDSNAVANE QAAQMTKSPV AKTGEQGALV INSSAFMAQR FVKEQQPGLD 600 TSSSTRRVPS YSDTAHFVPF INTMNSNPAT NSLDLLDPIS YGKADIESNH NLPSATVSDS 660 VEQKNQMPVE RSSQLSTVDA VFGSSTLKHH DSPKAKEPKI ISISEVNGGD QTADEEIKGG 720 QGNKHPENVG GHGKVDDSSA MKYDKEMRLF KNALVELVKE ILKPKWKEGQ MSREVHKTIV 780 KKVVDKVTST IEDDHIPKVQ NKVEQYLTAS KPKVTKLVQA YLERSLKTES *

Sequence ? help Back to Top

Protein Sequence Length: 831 aa Download sequence

MEDESKHLSG MSEFNSSTGK ENHSSFHSGR RNEISASGIS SAPESRDHSG WPNRESLEGN  60
TVAPLVDSFY KNRQDNAEAK EIGRGKSYNK NLSPGFDGAD WHKRDQTPEY DWSGSGRFVR  120
LYSELGFGTQ EKAGAGAGAE GEAGVRAGTR QGTEEGAGAG AGAGAEARAV SYSNDRGPGF  180
QSRNDVCDPY YEEDEQFRNQ SRNAFPCRDF MKGKCRWGDT CRFSHHEASG DSYGKGTRDA  240
SFSRHIEQQA NKNVKPSCKF FAAGNCNRDD CRFSHDGPKL NNLEGRPGED TSIFSLDDKS  300
KWWNGTSWDD SVKVSDKVKS TGGTGSVVAN VNVIGETALG RTDGRLDHSL EIERRTWGIP  360
KQNENYLKRD QQLSLLGESG SYDVDMGMTE SMVKESIAGK QECIFHDSQL LNEDGISHVY  420
GQNTMQEDHS LSIKTSQQNV ITDSHIQQHH QGPVEDNDVN LFGSDALDEV NGSGNAIHPV  480
LFPGRIFNQN GESLFPGDSS FSTETDRNQH VLIDLNRTQQ HKMSPSRLQS QMQNLHNAIK  540
TQVMSEFQAS QFDSNAVANE QAAQMTKSPV AKTGEQGALV INSSAFMAQR FVKEQQPGLD  600
TSSSTRRVPS YSDTAHFVPF INTMNSNPAT NSLDLLDPIS YGKADIESNH NLPSATVSDS  660
VEQKNQMPVE RSSQLSTVDA VFGSSTLKHH DSPKAKEPKI ISISEVNGGD QTADEEIKGG  720
QGNKHPENVG GHGKVDDSSA MKYDKEMRLF KNALVELVKE ILKPKWKEGQ MSREVHKTIV  780
KKVVDKVTST IEDDHIPKVQ NKVEQYLTAS KPKVTKLVQA YLERSLKTES *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-10	C3H family protein