PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu006925.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 338aa MW: 38314.1 Da PI: 7.2708

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu006925.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.1	1.9e-10	87	111	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt++C f++ GtC+ G+ C+FaHg Oeu006925.1 87 YKTRICVKFME-GTCRNGEHCTFAHG 111 9********.***********8 PP
2	zf-CCCH	25.3	2.7e-08	146	169	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ f+ + +C+yG++C+F H Oeu006925.1 146 MKICKKFYNGEECPYGEKCNFLHE 169 579****66**********5 PP
3	zf-CCCH	37.3	4.4e-12	226	251	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ + G+C++G+rC+FaHgp Oeu006925.1 226 WKTKLCSKWEI-GQCPFGERCHFAHGP 251 8********.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MSFPDPAQQP PLPPYPPHFA GGDVDGFWPQ PSMNNEHDAN FQFEHPPFMR PRNFESNPPD 60 CATFAPMKSR DEFAKSSGAK GTSHIFYKTR ICVKFMEGTC RNGEHCTFAH GIEDLREPPP 120 NWQELVREKE RGVGNFNDDQ RMIHRMKICK KFYNGEECPY GEKCNFLHEQ PMKFQTDMSR 180 EHRESVAISI GTTGPALGRR GDYDKQDYNK NVNVSSNTSQ ANTAFWKTKL CSKWEIGQCP 240 FGERCHFAHG PSDLQVPGAR VETELMMNSG SQIPAKPLPV PVINSAPASA VIGAPVNEDA 300 KNKEISKWKL NRQINRIYAD WWDDLSPPRN SPRKEEI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	3e-66	C3H family protein