PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu006263.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C2H2

Protein Properties

Length: 472aa MW: 53736.2 Da PI: 6.0888

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu006263.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00022	65	86	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C C+k+Fs+ L H+r H Oeu006263.1 65 VCRFCNKVFSSGKALGGHMRIH 86 6*******************99 PP
2	zf-C2H2	12.6	0.00042	390	412	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C++sF+++ L H ++H Oeu006263.1 390 YNCSTCDRSFPTHQALGGHRSSH 412 89**************9999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MVDDQDIQSR SIKKYDHKSQ VCGPFFGEGN LFIEMKILKN EEEGIEEDQN NGFQEQDQMN 60 NNKRVCRFCN KVFSSGKALG GHMRIHVQAN KDLAFKKKLK AYQSVKFKKQ KYLPEDEDRV 120 IDFVKKKKHY EGYNKNQTCI ICRKHFPSEK SLFGHMRCHP ERDWRGIHPP TMARNSSWSS 180 SSFDAETQKM DDQIDNWVDL TKSLKGWSVT AKRGRNAMVA SSSEISSLED DELRDAVNDL 240 MMLAHGDSYE SGLTNRQKVD ESDAANSTSL NSKAEVWDIS PVSKLKKQII EETYIDELGS 300 SIFENLEYLQ AKSVIDVGEA TDVPRTGLIL EKPVVEFEHE DSSDDKKKYS ETSYGNVTKK 360 NKKRRKKVKL SDLELVQNAS PMLALQPDKY NCSTCDRSFP THQALGGHRS SHTKIKIWVD 420 EEISNPIVQL ADETKESEAS NICRRALDFD LNEVPPPEDE TGIESELVVS N*

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MVDDQDIQSR SIKKYDHKSQ VCGPFFGEGN LFIEMKILKN EEEGIEEDQN NGFQEQDQMN  60
NNKRVCRFCN KVFSSGKALG GHMRIHVQAN KDLAFKKKLK AYQSVKFKKQ KYLPEDEDRV  120
IDFVKKKKHY EGYNKNQTCI ICRKHFPSEK SLFGHMRCHP ERDWRGIHPP TMARNSSWSS  180
SSFDAETQKM DDQIDNWVDL TKSLKGWSVT AKRGRNAMVA SSSEISSLED DELRDAVNDL  240
MMLAHGDSYE SGLTNRQKVD ESDAANSTSL NSKAEVWDIS PVSKLKKQII EETYIDELGS  300
SIFENLEYLQ AKSVIDVGEA TDVPRTGLIL EKPVVEFEHE DSSDDKKKYS ETSYGNVTKK  360
NKKRRKKVKL SDLELVQNAS PMLALQPDKY NCSTCDRSFP THQALGGHRS SHTKIKIWVD  420
EEISNPIVQL ADETKESEAS NICRRALDFD LNEVPPPEDE TGIESELVVS N*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	346	367	KKKYSETSYGNVTKKNKKRRKK
2	359	367	KKNKKRRKK
3	362	366	KKRRK
4	362	367	KKRRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	5e-14	C2H2 family protein