PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu005781.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | LBD | ||||||||
Protein Properties | Length: 203aa MW: 21737.7 Da PI: 7.9497 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.7 | 1.3e-40 | 12 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +k+l ++p+++r da+ +l+yeA ar++dPvyG+vg+i++lqqq+ +l+aela++ Oeu005781.1 12 PCGACKFLRRKCVKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKMLLRIPPHKRLDAVVTLCYEALARVKDPVYGCVGHIFTLQQQVVNLQAELAYI 109 7***********************9989********************************************************************99 PP DUF260 98 kee 100 +++ Oeu005781.1 110 QAR 112 876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence |
MSGGQNGSGG GPCGACKFLR RKCVKGCIFA PYFDSDQGTA HFAAVHKVFG ASNASKMLLR 60 IPPHKRLDAV VTLCYEALAR VKDPVYGCVG HIFTLQQQVV NLQAELAYIQ ARISTLHRLP 120 PPPPPQPPSL SSSNIQSSSG LVCSSNIMTH FDTSQSEETS TEMASFCNAV DEGLEDGDLQ 180 SLARDYVSRC LNGIKFRPST SQ* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 2e-67 | LBD family protein |