PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT40397

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 318aa MW: 35499.6 Da PI: 7.9561

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT40397	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C + Fs++ L H++ H OIT40397 142 FSCNFCERKFSTSQALGGHQNAH 164 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MINFLYLEDF VLLHLVYLNI CSLHSFIKCQ ERKDFSIETM DSFSMKKPCS SEASSISAAS 60 EEIDTNTKKM KGKVTDLGSE LKPHELSSAS VLLHLNVHNG ASNLELNLFH STSSMKNSAR 120 ASESSNEATP NKQRRSSETR VFSCNFCERK FSTSQALGGH QNAHKQERAL AKRQNELVDL 180 VSPFGPPYYH PYYKPYSSYT PHLPFHGSFT SQSSLGVQGD SSAIHKPSPY NPWSFFSGYN 240 YRFKSSSSSS LFRTENLGIG GSPLENSLMF ENKNTAKGFS LRDSPVKVDD NRGGNNKKKM 300 GLGEENAEES EIDLDLKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	1e-18	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT40397