PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT40306
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 391aa    MW: 44091.9 Da    PI: 8.1513
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT40306genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.11.8e-07231253123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               + C++Cgk F+r  nL+ H+r H
  OIT40306 231 HYCQICGKGFKRDANLRMHMRAH 253
               68*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    
MIEETTNIPC FPNTNPQNLP LYAPIHHNLD HMISSSVHVS DTSSLNHSDQ PSNCFLYNLS  60
LLKEKVDQIQ SLATMFISTD NQTIVQTSES TSMAIANMGS LIQEIITTAS SLMFSCQKIF  120
LGSTSATNNI NSSRFLEPSQ IKLQDNGHVD PLPQGFYSNE TLDHWYEENY ASCSNIEDNK  180
SHSTIIAITD HSSVQLGKRK FKNEGMQNIS SQENCDIIEL DAADLLAKYT HYCQICGKGF  240
KRDANLRMHM RAHGDEYKSN AALSNPLKNN GNDGLSKLSK KYSCPQEGCR WNKKHAKFQP  300
LKSMICVKNH YKRSHCPKMY MCNRCNKKQF SVLSDLRTHE KHCGDLKWQC SCGTTFSRKD  360
KLMGHVALFV GHTAVINSLA KMGKYEQNNV Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-113C2H2 family protein