PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT38779

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 594aa MW: 62974.9 Da PI: 9.4407

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT38779	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.8	1e-07	205	249	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed l+ av++ G g+W+ I + Rt+ q+ rw OIT38779 205 RKPWSAAEDMELIAAVQKCGEGNWANILKGDFkGDRTASQLSQRW 249 789************************984222488888888888 PP

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence
MVEKRKLQKR VFIGEDDVSS LLQRYTAMTV LTVLQEVSQV QDVKIDWNEL VKKTTTGITN 60 AREYQMLWRH LAYHHGLLDK FDDDSAQPLD DDSDLEYELE AFPPVSSEAS AEATTYVKVL 120 IASGVPCDSH MSNGNTIEAP LTISIPNGQT SGTATENSLR GISAYGMKIT VPVSVEKQPL 180 PSVTAAEVVD TNGPANSNFP PRRRRKPWSA AEDMELIAAV QKCGEGNWAN ILKGDFKGDR 240 TASQLSQRWA IIRKRHGNMV GNGSQLSEAQ LAARHAMSLA LGDNLRAACP ISTNVGPNSG 300 SAPSNSSHFP AANNASGGPK SEHQQDLVPS KPRVIPKNPL PKPAINPDSL VKTAAMAAGS 360 RIPTPSGAAA SLQKAAESKK VVQIMPGGTP AVKSSVPGST NGLPSNVHFI RNGLVSRPPG 420 CGPSNASQSA VRPNLGAVPS KTNVSSGVPA APTSSSARVL EAKTKAVAIQ ENPTAILSNA 480 RIEKVEVDRA ASMDAQQVRK GQTFGSINLL TEKIEGQTSI LGHTVKEHGG ESKASRVRAQ 540 EKLIPSLETA SNSSIRNQGE NSNKNENTKI VLALESSGVQ GPAPETCNKV FKES

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence

MVEKRKLQKR VFIGEDDVSS LLQRYTAMTV LTVLQEVSQV QDVKIDWNEL VKKTTTGITN  60
AREYQMLWRH LAYHHGLLDK FDDDSAQPLD DDSDLEYELE AFPPVSSEAS AEATTYVKVL  120
IASGVPCDSH MSNGNTIEAP LTISIPNGQT SGTATENSLR GISAYGMKIT VPVSVEKQPL  180
PSVTAAEVVD TNGPANSNFP PRRRRKPWSA AEDMELIAAV QKCGEGNWAN ILKGDFKGDR  240
TASQLSQRWA IIRKRHGNMV GNGSQLSEAQ LAARHAMSLA LGDNLRAACP ISTNVGPNSG  300
SAPSNSSHFP AANNASGGPK SEHQQDLVPS KPRVIPKNPL PKPAINPDSL VKTAAMAAGS  360
RIPTPSGAAA SLQKAAESKK VVQIMPGGTP AVKSSVPGST NGLPSNVHFI RNGLVSRPPG  420
CGPSNASQSA VRPNLGAVPS KTNVSSGVPA APTSSSARVL EAKTKAVAIQ ENPTAILSNA  480
RIEKVEVDRA ASMDAQQVRK GQTFGSINLL TEKIEGQTSI LGHTVKEHGG ESKASRVRAQ  540
EKLIPSLETA SNSSIRNQGE NSNKNENTKI VLALESSGVQ GPAPETCNKV FKES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	207	PRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	4e-77	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OIT38779