PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT38372
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 429aa    MW: 49850.9 Da    PI: 9.1318
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT38372genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.6e-121896998
              HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
        B3  9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                +k++ l +p  f+ ++  g++   +++  +  + +++W+vk+  ++++    +++GW +F+++++L+ gD ++F+++g++ f   v +f+
  OIT38372 18 PGFKQA-LKIPTGFL-KYlkGYD---HIEHAILRRGSKQWRVKV--NGCQ----FEAGWADFAQQHDLQLGDLLIFRHEGNMVF--EVIIFD 96
              455555.99*****9.6655444...5677888999********..7776....9***********************999999..777776 PP
2B349.76.6e-16140222490
               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                +++s++l++g +++p +fa+++g+  + + +l+++de+ rsW++kl    +  ++++++ W +F  +n+Lk+gD ++F+++ + ++
  OIT38372 140 CTVRSYYLRKGYMRVPSRFASKNGLTYK-KCDLIIRDERQRSWNLKL--YTSCHHVYIGGRWAKFRAENDLKVGDRIMFEVVTN-GE 222
               5678*******************88754.459***************..999999*************************8764.33 PP
3B347.24e-15328414595
               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
               +++++ l+ + l+lp +fa ++g+++ ++ +l+++de+ rsW++ +  r  + ++ +++GW++F + + LkegD ++F+++  +++++v k
  OIT38372 328 TIRPYCLTYSYLILPTQFALTNGLIN-KKYDLIIRDEWQRSWNLMV--RPFGTSVCIRGGWSKFRDTHCLKEGDQIMFEVVT-DGTKPVWK 414
               56788999999***********9995.668****************..*******************************876.56656655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    
MKEKVRPVKP HFFKPIQPGF KQALKIPTGF LKYLKGYDHI EHAILRRGSK QWRVKVNGCQ  60
FEAGWADFAQ QHDLQLGDLL IFRHEGNMVF EVIIFDSSHC DREYEEYLLQ EEDIVEEACK  120
KFKFKEAATH NPFGQSHFEC TVRSYYLRKG YMRVPSRFAS KNGLTYKKCD LIIRDERQRS  180
WNLKLYTSCH HVYIGGRWAK FRAENDLKVG DRIMFEVVTN GERPIWKFHV KPNPSIKSSS  240
KAFPYAEAAA HKPFGHSHLD SGHCNRKYAE YLQDKEEEEE EAAGDAVEGT SKKFELKDEP  300
NASVKSSSKA FPHVEAAIHK PFGHFVCTIR PYCLTYSYLI LPTQFALTNG LINKKYDLII  360
RDEWQRSWNL MVRPFGTSVC IRGGWSKFRD THCLKEGDQI MFEVVTDGTK PVWKFHGKIS  420
GECKNQSRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-36B3 family protein