PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT4G00260.1 | ||||||||
Common Name | F5I10.15, MEE45, REM15.15 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 528aa MW: 60034.8 Da PI: 9.1874 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.5 | 1.5e-15 | 14 | 92 | 12 | 97 |
HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ l++p f+ ++ +g e+kt +l++ s r+Wevk+ ++++ lt+GWkeF+ +++L+ gD+vvF+ ++s+ ++v+++ AT4G00260.1 14 FHASLTIPVAFFLKYiEGR-YEQKTAKLRSdASKRTWEVKI--DGQR----LTDGWKEFAVSHDLRIGDIVVFR--QESDLAFHVTLL 92 45669**********7444.45679999987889*******..9888....***********************..557776688765 PP | |||||||
2 | B3 | 67.3 | 2.2e-21 | 138 | 227 | 4 | 96 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + + +++l+ +++++p+ f++++g + +s +++l++e+grsW+++l+ + + g+++ ++GW +F++angLk+gD +Fkl++ + ++lv+++ AT4G00260.1 138 ANVAPSSLRYDLMRFPRGFVRDNGVV--GSGEIVLMNEKGRSWNFNLRQKPSNGTVYVRGGWVSFCDANGLKAGDNYTFKLIK-RAGTLVLRL 227 567889999**************977..7779***************99999999***************************9.555567666 PP | |||||||
3 | B3 | 73.1 | 3.3e-23 | 282 | 373 | 4 | 97 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + +++++l+ + l+lpk+f++e+g +k+++ +++l +e+g+sW++ l+++k+sg+ ++++GW++F++angL++g ++++kl++ ++++lv++++ AT4G00260.1 282 ANVSPSSLRYDTLYLPKRFMRENGVDKRCG-EMILINEKGKSWTLDLKVKKSSGTSLIKRGWRSFCSANGLRAGSIITLKLIK-KRATLVLRLI 373 5678899999*************9999998.**************************************************98.7777787765 PP | |||||||
4 | B3 | 54.1 | 2.9e-17 | 441 | 522 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +lp +f++ +g+++e +++tl d++g +W +l++ + k++r + +GW++F +an++k++++++++l++++e+++v+k+++k AT4G00260.1 441 RLPVPFTRMNGINEE--TKMTLLDKHGVKWLTTLRFeDDKRKRLRMVGGWQGFIQANDVKANESIMLELIWEEETSCVLKFCSK 522 89********99954..58*****************988888999************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.266 | 3 | 95 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.5E-21 | 3 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.08E-17 | 4 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.31E-15 | 5 | 92 | No hit | No description |
SMART | SM01019 | 4.0E-21 | 6 | 95 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-10 | 15 | 89 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-21 | 128 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-22 | 131 | 233 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 16.863 | 135 | 231 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.35E-20 | 135 | 229 | No hit | No description |
SMART | SM01019 | 1.8E-29 | 136 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-20 | 137 | 228 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.4E-22 | 272 | 371 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.06E-21 | 275 | 378 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.78E-21 | 279 | 374 | No hit | No description |
PROSITE profile | PS50863 | 15.763 | 279 | 376 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-28 | 280 | 376 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.8E-21 | 281 | 374 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.6E-17 | 410 | 522 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.2E-20 | 414 | 523 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.406 | 425 | 522 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.53E-12 | 428 | 520 | No hit | No description |
SuperFamily | SSF101936 | 4.51E-15 | 438 | 521 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.2E-15 | 441 | 522 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 528 aa Download sequence Send to blast |
MAHQHFFKPL LPGFHASLTI PVAFFLKYIE GRYEQKTAKL RSDASKRTWE VKIDGQRLTD 60 GWKEFAVSHD LRIGDIVVFR QESDLAFHVT LLGPSCCGIQ YGSCSVEKNN LGDEKKKVKE 120 NPNGEAESSS RDPSCFVANV APSSLRYDLM RFPRGFVRDN GVVGSGEIVL MNEKGRSWNF 180 NLRQKPSNGT VYVRGGWVSF CDANGLKAGD NYTFKLIKRA GTLVLRLLPN EPKEEANEVS 240 LPEEPESDAE RNLEKIQRKE KVKKNVTREA ESSSQDPSCF VANVSPSSLR YDTLYLPKRF 300 MRENGVDKRC GEMILINEKG KSWTLDLKVK KSSGTSLIKR GWRSFCSANG LRAGSIITLK 360 LIKKRATLVL RLIPNEPEEA NEVVSLSTEQ ESDEESIHDE KISRRKSLLS ENRFVTLTLT 420 PYTIQSSLLN ENLLCESMFQ RLPVPFTRMN GINEETKMTL LDKHGVKWLT TLRFEDDKRK 480 RLRMVGGWQG FIQANDVKAN ESIMLELIWE EETSCVLKFC SKVKLEIK |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 256 | 263 | QRKEKVKK |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 42566181 | 0.0 | ||||
Genevisible | 257436_s_at | 1e-107 | ||||
Expression Atlas | AT4G00260 | - | ||||
AtGenExpress | AT4G00260 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT4G00260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT4G00260 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK117514 | 0.0 | AK117514.1 Arabidopsis thaliana At2g24650 mRNA for unknown protein, complete cds, clone: RAFL17-15-N14. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_567162.2 | 0.0 | Transcriptional factor B3 family protein | ||||
Swissprot | O23076 | 0.0 | REM15_ARATH; Putative B3 domain-containing protein REM15 | ||||
TrEMBL | A0A178V1U9 | 0.0 | A0A178V1U9_ARATH; MEE45 | ||||
STRING | AT4G00260.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 | Representative plant | OGRP2682 | 2 | 31 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT4G00260.1 |
Entrez Gene | 828225 |
iHOP | AT4G00260 |
wikigenes | AT4G00260 |
Publications ? help Back to Top | |||
---|---|---|---|
|