PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OIT37721 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26597.2 Da PI: 6.0708 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.6 | 3.4e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl++yss OIT37721 9 KKIDNVTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 53.7 | 9e-19 | 91 | 173 | 18 | 100 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++a+L kei++ +++R++ Ge+L+ Ls++eLqqLe+ Le +l+++ +kK + ++++i++lq+k +l een++L++++ e OIT37721 91 NSDYARLTKEISQKSHQLRQMRGEELQGLSIEELQQLEKSLEAGLSRVIEKKGDKIMKEINQLQEKGIQLMEENERLKQQVRE 173 5689***************************************************************************9975 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence |
MVKEKIQIKK IDNVTARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFDYSSS 60 SMKEILERHN LLSKNLHKLE QPSLELQLVE NSDYARLTKE ISQKSHQLRQ MRGEELQGLS 120 IEELQQLEKS LEAGLSRVIE KKGDKIMKEI NQLQEKGIQL MEENERLKQQ VREISINSSE 180 HPAIVVAVES ENIYYEERQS SESVNNASNS TSPPPLEDHS SDTFLKLGLP YPG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-115 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OIT37721 |